Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3283 ATGGCCACTTCTGCCACCACAACCGCTGCAGTGTTGCGCCAGCTCTCGCAGAAGGAGCAAGACATCCAAATGATGCTCGCAGCCGAGGTTCATCTCGGAACCAAAAACTGCAACTTCCAGATGGAACGCTACGTTTTCAAGCGCCGCAATGATGTCTTGAAGTTTTCCCAATACACGGGTGCGAATGCAATTGCTAGAAGGAACACTCTTGGAACATTCACTAATCAGATGCAGACATCCTATAACGAGCCTCGCCTACTCATTCTGACTGATCCAAGGACTGATCACCAGGTTTTGCTTTTCTATATATTTTTTTTTAAAAATGTGCAGCCCATTAAGGAAGGTGCTCTTGGAAATATTCTGACGATTGCCTTCTGTGACACTGATTCTTCGATGCGCTATGTCGATGTTGGCATTCCTGCCAATAACAAGGGGAAGCACAGTATTGGTTGTCTATTTTGGTTATTAGGAAGGATGGTTCTACAGATGAGGGGTACTATTCATCCAGGGCTTAAGTGGGATGTGATGGTGGATTTATTCTTCTATAGAGAAGCTGAAGAGGCCAAGCAACAAGAGGAGGAGGAATTACCAGCTGCCCCAGAATATGCCATTCAAGATTTTGGTGCTGCTGGCATTGCCGGCTTCCCTGCAGCTGATGGGGAATGGGGGCTGTTACAGCTGACCAATCATGGACTGAACCAGTTCCTCAACAACCCATTGCAGCTGCTCCTGCTAACTGGGCCCCAGACGCCGGTGATTGGAAGCCAGTTCCAGATCCACAGGCTTCTGTTCCAGCACCCGGAGGTGTTGCCCCCACTGGCTGGGAATAAGCACTCTTAA 840 0.4857 MATSATTTAAVLRQLSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDVLKFSQYTGANAIARRNTLGTFTNQMQTSYNEPRLLILTDPRTDHQVLLFYIFFFKNVQPIKEGALGNILTIAFCDTDSSMRYVDVGIPANNKGKHSIGCLFWLLGRMVLQMRGTIHPGLKWDVMVDLFFYREAEEAKQQEEEELPAAPEYAIQDFGAAGIAGFPAADGEWGLLQLTNHGLNQFLNNPLQLLLLTGPQTPVIGSQFQIHRLLFQHPEVLPPLAGNKHS* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3283 279 CDD RPS2 25 162 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo16g3283 279 SUPERFAMILY Ribosomal protein S2 17 178 IPR023591 -
Amo16g3283 279 PANTHER 40S RIBOSOMAL PROTEIN SA 52 204 IPR005707 GO:0003735|GO:0006412|GO:0015935
Amo16g3283 279 PANTHER 40S RIBOSOMAL PROTEIN SA 14 51 IPR005707 GO:0003735|GO:0006412|GO:0015935
Amo16g3283 279 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Amo16g3283 279 PANTHER 40S RIBOSOMAL PROTEIN SA 52 204 - -
Amo16g3283 279 PANTHER 40S RIBOSOMAL PROTEIN SA 14 51 - -
Amo16g3283 279 Pfam Ribosomal protein S2 103 160 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo16g3283 279 Gene3D - 21 51 - -
Amo16g3283 279 Gene3D - 52 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3283 Amo-Chr16 139000376 139002806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3283 1 203 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 60.816 1.05e-96 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3283 K02998 - gmx:100818292 294.278