Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3282 ATGCCAGCTTTGATGTCATCTAGGTTTCTTCTTCTTGTTGGAGAGTCCTTCCCCATTAGAAGAGCATTGGCTACTCATAAAAATGCTTCTTCTTTGTTGCACACAAGTATTCATTGTATGAGCCAAGTGGAACCACCCAATCATGGTTCCTTAACCCTCTCAAGTGTTGGTTTCCAAGGTGAAGTTGATAAACCAATTAACAAAGGTGGCAAGTCTAGCAGCAAGGTAAAGCCATTGTTGGGTTCATCCCCTGGGTCCCTTAAGAGCAAAGGCATAGGGAAACCTATTGCTTCCAGTGAGAAGAAGAAAGCGTTTGGGATTGTTGAGAGGAAGAAACAACAAATCGAGGCTGCCCCATTTGCAGCAAAATCGTTCTCTGAACTTGGGTTGCCCCTTGTTCTGATTGAGAGACTGGAGAAAGAGGGGTTCAGTGTTCCAACTGAAGTTCAGTCTACAGCTGTTCCTACCATTCTGCAGAACCATGATGTCATAATTCAGTCTTACACGGGTTCGGGGAAGACATTGGCTTATCTGCTTCCTATACTATCATCTATTGGTCCACTGATGAACAAAGTTTCCAAGAGTGCCAGTGGTGGTGATTCTGGTGGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGTGAGGGAGTTTGAGAACATACTAGGAGTGGAGAACAAGAAAGTGGAAGAAGCTCTCAAGAAGAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGGATAGCGGAACTTAGTGCAGCAGGGAAGCTTCGGACACATGGCTGTCGCTATTTGGTATTGGATGAAGTTGATGAGCTCTTGTCATTCAATTTTTGGGAGGACATGCACCGGATATTGGAGCATGTAGGCAGGAGATCAGGTGCAGACCCGGATCCAAATGTTAAAAGGACTGAGCGTCAGTTAATTATGGTGTCTGCAACTGTGCCGTTTTCTGTTGTAAGAGCAGCGAGAAGCTGGGGATGTGATCCACTTCTCGTCCAAGCTAAGAAAGTTATCCCGCTTGATACTGTCTCGCCTTCGGCCCCTATCAATTTGTCAAGGCCTTCGGTCGGTTCTACTCCAGACCCAACTAAGCCATCTCAGGCATCAGTAGAGAGTTTGCCTCCGGCTTTGAAACACTATTACTGTGTAGCAAGGTTACAGCATAAGGTCGATACCATGAGAAAGTGTATTCATGCCTTGGATGCAAAAGTTGTAATAGCTTTCATGAACAACACTAAGCAACTAAAGGATGTCGTCTTCAAGGAGGCCTGTGGAATGAAAGCGGCAGAGTTGCATGGGGATCTTGGGAAGCTTGCTAGGTCATCAACTTTGAAGAAATTCAAGAATGGCGAGGTGAGAGTTCTAGTGACAAATGAATTATCAGCTAGAGGTTTGGATGTGGCAGAATGTGATCTCGTGGTTAATCTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCAGGCCGAACTGGTCGGCTTGGTAGGGATGGTACAGTGCTGACCATATGTGAAGAGTCCGAAGTTTTTATTGTGAAGAAAATGGAGAAGCAGCTTGGAGTAACTGTGGCGTTCTGCGATTTTGTTGAGGGAAAGATGCTTGTCAACCAAGAAGAGAAAGCACTCAGCACTTCAAGAAAATGA 1674 0.4558 MPALMSSRFLLLVGESFPIRRALATHKNASSLLHTSIHCMSQVEPPNHGSLTLSSVGFQGEVDKPINKGGKSSSKVKPLLGSSPGSLKSKGIGKPIASSEKKKAFGIVERKKQQIEAAPFAAKSFSELGLPLVLIERLEKEGFSVPTEVQSTAVPTILQNHDVIIQSYTGSGKTLAYLLPILSSIGPLMNKVSKSASGGDSGGKMGIEAVVVAPSRELGMQIVREFENILGVENKKVEEALKKNKPAIVVGTPGRIAELSAAGKLRTHGCRYLVLDEVDELLSFNFWEDMHRILEHVGRRSGADPDPNVKRTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVIPLDTVSPSAPINLSRPSVGSTPDPTKPSQASVESLPPALKHYYCVARLQHKVDTMRKCIHALDAKVVIAFMNNTKQLKDVVFKEACGMKAAELHGDLGKLARSSTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSTHYAHRAGRTGRLGRDGTVLTICEESEVFIVKKMEKQLGVTVAFCDFVEGKMLVNQEEKALSTSRK* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3282 557 SMART ultradead3 142 352 IPR014001 -
Amo16g3282 557 Pfam DEAD/DEAH box helicase 147 327 IPR011545 GO:0003676|GO:0005524
Amo16g3282 557 Pfam Helicase conserved C-terminal domain 404 505 IPR001650 -
Amo16g3282 557 CDD SF2_C_DEAD 386 514 - -
Amo16g3282 557 Gene3D - 383 538 IPR027417 -
Amo16g3282 557 MobiDBLite consensus disorder prediction 358 379 - -
Amo16g3282 557 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Amo16g3282 557 CDD DEADc 134 342 - -
Amo16g3282 557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 341 IPR014001 -
Amo16g3282 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 535 IPR027417 -
Amo16g3282 557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 544 IPR001650 -
Amo16g3282 557 SMART helicmild6 423 505 IPR001650 -
Amo16g3282 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 22 533 - -
Amo16g3282 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 22 533 - -
Amo16g3282 557 Gene3D - 95 343 IPR027417 -
Amo16g3282 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 342 IPR027417 -
Amo16g3282 557 MobiDBLite consensus disorder prediction 64 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3282 Amo-Chr16 138969669 138973666 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3282 124 533 Eukaryotic Initiation Factors Gene Family AT3G19760 24.122 8.83e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3282 - - aip:107613119 1011.52