LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo16g3280	ATGATGCCAGCTTTGATGCCATCTAGGTTTTTTCTTCTTGTTGGAGAGTCATTTCCCATTAGAAGAGCATTGGCTACTCATAAAAATGCTTCTTCTTTGTTGCACATAAGTATTCATTGTATGAGCCAAGTGGAACCACCCAATCATGGTTCCTTAACCCTCTCAAGTGTTAGTTTTCAAAGTGAGGTTGATAAACCAATTAACAAAGGTGGCAAGTCTAGCAGTAAGGTAAAGCCATTGTTGGGTTCATCCCCTGGGTCCCTTAAGAGCAAAGGCATAGGGAAACATATTGGTTCCAGTAAGAAGAAGAAAGCGTTTGGGATTGTTGAGCGGAAGAAACAACAAATCAACGCTGCTCCATTTGCAGTAAAATCATTCACTGAACTTGGGTTGCCCCTTGTTCTGATTGAGAGACTGGAGAAAGAGGGGATCAGTGTTCCAACTGAAGTTCAGTCTGCAGCTGTTCCTACCATTCTGCAGAACCATGATGTCATAATTCAGTCTTACACGGGTTCGGGGAAGACATTGGCTTATCTTCTTCCTATACTATCATCTATTGTTCCACTGATGAACAAAGTTTCCAAGAGTTCCAGTGATGGTGATTCTGGTGGGAAAATAGGAATAGAAGCAGTGGTTGTTGCTCTCTCAAGGGAGCTAGGGATGCAGATAGAAGAAGCTCTCAAGAAGAATAAACCTGCCATTGTTGTTGGCACACCTGGACATGCACCAGATATTGGAGCATGTAGGCAGGAGATCATGTGCAGACCAGATCCAAATGTTAAAAGGACTGGGCGTCAATTAATTATGGTGTCTGCAACTCTGCCGTTTTCTGTTGTAAGAGCAGCGAGAAGCTGGGGATGTGATCCACTTCTTGTCCAAGCTAAAATGAAAGCGACAGAGTTGCATGGGGATCTTGGGAAGCTTACTAGGTCATCAAGTTTGAAGAAATTCAAGAATGGCGAGGTGAGAGTTCTTGTGACAAATGAATTATCAGCTAGAGGTTTGGATGTGGCAGAATGTGATCTCATGGTTAATTTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCAGGCCGAATTGGTCGGCTTGGTAGGGATGGTACAGTGCTAACCATATGTGAAGAGTACGAAGTTTTTATTGTGAAGAAAATGGAGAAGCAGCTTGGAGTAACTATGGCGTTCTGCAATTTTGTTGAGGGAAAGATGCTTGTCAAGCAAGAAGAGAAAGCACTCAGCACTTCAAGAAAATGA	1257	0.4312	MMPALMPSRFFLLVGESFPIRRALATHKNASSLLHISIHCMSQVEPPNHGSLTLSSVSFQSEVDKPINKGGKSSSKVKPLLGSSPGSLKSKGIGKHIGSSKKKKAFGIVERKKQQINAAPFAVKSFTELGLPLVLIERLEKEGISVPTEVQSAAVPTILQNHDVIIQSYTGSGKTLAYLLPILSSIVPLMNKVSKSSSDGDSGGKIGIEAVVVALSRELGMQIEEALKKNKPAIVVGTPGHAPDIGACRQEIMCRPDPNVKRTGRQLIMVSATLPFSVVRAARSWGCDPLLVQAKMKATELHGDLGKLTRSSSLKKFKNGEVRVLVTNELSARGLDVAECDLMVNLDLPTDSTHYAHRAGRIGRLGRDGTVLTICEEYEVFIVKKMEKQLGVTMAFCNFVEGKMLVKQEEKALSTSRK*	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo16g3280	418	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	261	296	-	-
	Amo16g3280	418	CDD	SF2_C_DEAD	290	375	-	-
	Amo16g3280	418	Gene3D	-	281	417	IPR027417	-
	Amo16g3280	418	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	294	394	-	-
	Amo16g3280	418	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	21	225	-	-
	Amo16g3280	418	Pfam	Helicase conserved C-terminal domain	290	366	IPR001650	-
	Amo16g3280	418	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	261	296	-	-
	Amo16g3280	418	SMART	ultradead3	143	302	IPR014001	-
	Amo16g3280	418	Pfam	DEAD/DEAH box helicase	148	231	IPR011545	GO:0003676\|GO:0005524
	Amo16g3280	418	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	119	383	IPR027417	-
	Amo16g3280	418	MobiDBLite	consensus disorder prediction	65	87	-	-
	Amo16g3280	418	Gene3D	-	95	238	IPR027417	-
	Amo16g3280	418	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	294	394	-	-
	Amo16g3280	418	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	21	225	-	-
	Amo16g3280	418	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	124	152	IPR014014	GO:0003724
	Amo16g3280	418	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	259	405	IPR001650	-
	Amo16g3280	418	SMART	helicmild6	288	366	IPR001650	-
	Amo16g3280	418	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	155	292	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo16g3280	Amo-Chr16	138955232	138956949	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo16g3280	123	388	Eukaryotic Initiation Factors Gene Family	AT3G19760	23.056	3.20e-21	93.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo16g3280	-		-	aip:107613119	427.172