Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3278 ATGAGTTCTGCCACCGTCGAGTCTCTCCGTCTCAAGCATTGCCACCTTTGTCTAGCCAAGATCGCGGCCGACCCGCCATCCTCTTCTCTGAGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTTGCAATTGAAAACCCGCAGGATATCATTGTTCAGTCTACTAGGCCATATGGTCAGAGAGTTGTCCTTAAGTTTGCACAATACACTGGTGTGAATGCAATTGCTGGAAGGCACACTCCTGGAACATTCACTAATCAAATGAAACATCCTATAACGAGCCTCGTCTACTCATTCTGA 330 0.4576 MSSATVESLRLKHCHLCLAKIAADPPSSSLSIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSTRPYGQRVVLKFAQYTGVNAIAGRHTPGTFTNQMKHPITSLVYSF* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3278 109 CDD RPS2 32 97 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo16g3278 109 PANTHER 40S RIBOSOMAL PROTEIN SA 32 99 IPR005707 GO:0003735|GO:0006412|GO:0015935
Amo16g3278 109 PANTHER 40S RIBOSOMAL PROTEIN SA 32 99 - -
Amo16g3278 109 Pfam Ribosomal protein S2 31 97 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo16g3278 109 Gene3D - 26 105 - -
Amo16g3278 109 PRINTS Ribosomal protein S2 signature 31 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo16g3278 109 PRINTS Ribosomal protein S2 signature 80 97 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo16g3278 109 SUPERFAMILY Ribosomal protein S2 31 100 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3278 Amo-Chr16 138913248 138913879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3278 31 99 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 88.406 1.62e-41 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3278 K02998 - aip:107647299 159.073