Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3258 ATGAAGTTTAGGACTTTTGAGGTCACCCTTCTTCAATCAAAGAGGACCGGACGGACCCATCATTTCCCCTTTTCTTTTTTATTAATTCTTTTTTCTTTACTTTCTCTCTTTCCCCCACACAAACACACACTGTTCATGGATCCCAAGGGCTCAAAGCAGCCACAGGAGTCACCACAACCACCACCAACAAACAACACCATGGGAGAGAACAAGGCATCAGAAGTGAAGGATTTCCAGATTGTGGTATCAGAGAAAGAAGAGAACAAGAAACAGGTCTCACAGCAGTTAGCGCCAAAGAGAAGCTCCAACAAAGACAGACACACAAAGGTGGAAGGAAGAGGAAGAAGGATAAGGATGCCGGCGCTGTGTGCAGCAAGGATCTTCCAGTTGACCAGAGAATTAGGCCACAAATCTGACGGCGAAACAATCCAGTGGCTCCTCCAACAAGCCGAGCCTTCAATAATAGCCGCAACCGGCACCGGAACAATCCCGGCTTCCGCTCTCGCTGCGGCAGGAAACTCCATCTCTTCGCACCAGTCAGCAACCCAATCTCTTTCAGCAGGTTTACACCAAAAGATTGACGAATTAGGAGGGTCCAGCAGTAGGACCAGTTGGGCAACAATGGTTGGTGTTGGGAATTTAGTTGGAAGACCCCATCATCATCATCATCAAGTGGCCGCAGCCGCCACAGCAGGGTTATGGCCCCACCATCACGAGGGATCATCAAATTACCTTCAAAAGATTGGGTTCCCGGGGTTTGACTTTTCAGTTCCCTCTGGTGCTGCTGCCGCTGGTGGTGGCGGCATGGGTCCGATGAGCTTTACATCAATTTTGGGTGGTTCACAACAACAGATGCCTGGTTTGGAGCTTGGTTTGTCGCAAGATGGACATATTGGGGTCATAAATCCACAGGCCTTGACTCAGATTTACCAGCAGATGGGTCAGGCTAGGGTGCACCAGGACCATCAAGAACACCAACACCAACACCACCACCATCACCACCAGCAGACTCCTCCTTCTAAGGATGATTCTCAAGGCTCTGGACAGTAG 1050 0.4971 MKFRTFEVTLLQSKRTGRTHHFPFSFLLILFSLLSLFPPHKHTLFMDPKGSKQPQESPQPPPTNNTMGENKASEVKDFQIVVSEKEENKKQVSQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSISSHQSATQSLSAGLHQKIDELGGSSSRTSWATMVGVGNLVGRPHHHHHQVAAAATAGLWPHHHEGSSNYLQKIGFPGFDFSVPSGAAAAGGGGMGPMSFTSILGGSQQQMPGLELGLSQDGHIGVINPQALTQIYQQMGQARVHQDHQEHQHQHHHHHHQQTPPSKDDSQGSGQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3258 349 MobiDBLite consensus disorder prediction 313 349 - -
Amo16g3258 349 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 69 348 - -
Amo16g3258 349 MobiDBLite consensus disorder prediction 45 71 - -
Amo16g3258 349 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 69 348 IPR005333 GO:0003700
Amo16g3258 349 ProSiteProfiles TCP domain profile. 103 157 IPR017887 -
Amo16g3258 349 MobiDBLite consensus disorder prediction 85 112 - -
Amo16g3258 349 Pfam TCP family transcription factor 102 197 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3258 Amo-Chr16 138021253 138023457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3258 69 349 TCP Transcription Factor Family AT3G27010 57.096 1.44e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo16g3258 TCP 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3258 - - aip:107604999 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3258 16 138021253 138023457 Amo16g3258 16 138021253 138023457 ECH