Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3253 ATGGCCATCTCTTTAAGCACTCCTCCTCCCTTTCGCTTCCTCTCAGGCTCACCACCCCCATTCCCCCTTTCTAATTTAACCCCAATTTCACCCTCACTCAACCATAATCGCCTCAGTTCTTCCAGGTTCAATTTCCCTGCACCAACAACCAAGCTTCCCACCATCAACTGCAATTACACCGCTTTTGAAGTTAGAGATGTTAGCTATCAGCCTCCGGGGACTCAGCTTAAGCTACTGAATTCAGTTAGTTTCTCACTTCCGGAGAAAAGTTTTGGTCTAATTTTCGGACAAAGTGGAAGTGGGAAAACAACACTCTTGCAGCTTCTTGCAGGAATAAGCAAACCGACCACTGGATCCATTTACAGCCAAAAGTATGGAAATGATGGAAATCCTATCCAGCCTCCTGAGCCTTTGTCACCAGAAAGAGTTGCTGAAACTGTGCTTGATGAAGTCACTTTTGGGTGGCCAAGGCAAAAGGGTAGCTATCAATTGAGAGAAAATCTTGCTTTAGGGCTTCAAAGGGCAATTAACTGGGTTGGATTGAATGGGATATCATTGGACAAAAATCCTCACTCCCTTAGCGGCGGTTACAAACGCCGCCTTGCTTTGGCAATTCAATTAGTGCAAATCCCTGATCTATTGATATTGGATGAGCCTCTTGCTGGACTTGATTGGAAAGCACGTGCAGATGTTGTGAAGCTTTTAAAGCATCTAAAAAGGGAGTTGACTGTTCTTGTTGTCAGCCATGACTTGAGGGTTATGGTGGCAACTAGTGAAGGAAGGCCACCATTGAGCAGCAGTTGTAAAGAGTGGTTGGCAGCAAAGATTGGAGTGGATATCAGAGGGAACCGGCATATGAAATCGATCATGGAAGATGGAGATGGGTGGCAACCTCAGAGAGGAGTTACTTCCATTGTAGTTCATACTCGCTGCCTTTTTATTAGCACCGGATTCTATGAGTGCTCATTGTTTGTAGTTGAAGTACTGCAACTAAGCCCATCTTGTGGCGGGTTCCAGATGGGCTCACAGTTTCGGGAAGACTTTGTTGACTTGGTGTCCGAATTAACTCTTCTGCCTTTGTCTGGGTTTGCAATGGAGATGGGGACAACCATTGAATTTGATGTTAAGTGCAGAAGATCTGGCATGGGAAATGTTGGTGTTGCTGGTTCATTGTTGACTATTTCTGTGCCAAGAGTTCCAATTGTTAGAAAGCCTTCAAAGAGCTCGGAGATGGCTGCAGGTGTTTCTTGTTTGGACTCCCCTTCAACATCAAGCCCCGAATAA 1284 0.4533 MAISLSTPPPFRFLSGSPPPFPLSNLTPISPSLNHNRLSSSRFNFPAPTTKLPTINCNYTAFEVRDVSYQPPGTQLKLLNSVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGISKPTTGSIYSQKYGNDGNPIQPPEPLSPERVAETVLDEVTFGWPRQKGSYQLRENLALGLQRAINWVGLNGISLDKNPHSLSGGYKRRLALAIQLVQIPDLLILDEPLAGLDWKARADVVKLLKHLKRELTVLVVSHDLRVMVATSEGRPPLSSSCKEWLAAKIGVDIRGNRHMKSIMEDGDGWQPQRGVTSIVVHTRCLFISTGFYECSLFVVEVLQLSPSCGGFQMGSQFREDFVDLVSELTLLPLSGFAMEMGTTIEFDVKCRRSGMGNVGVAGSLLTISVPRVPIVRKPSKSSEMAAGVSCLDSPSTSSPE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3253 427 PANTHER HEAVY METAL TRANSPORTER 54 257 - -
Amo16g3253 427 CDD ABC_cobalt_CbiO_domain1 63 251 IPR015856 GO:0005524|GO:0016020|GO:0055085
Amo16g3253 427 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 62 301 IPR003439 GO:0005524
Amo16g3253 427 PANTHER ABC TRANSPORTER I FAMILY MEMBER 11, CHLOROPLASTIC 54 257 - -
Amo16g3253 427 SMART AAA_5 88 277 IPR003593 -
Amo16g3253 427 Pfam ABC transporter 79 220 IPR003439 GO:0005524
Amo16g3253 427 Gene3D - 54 273 IPR027417 -
Amo16g3253 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 254 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3253 Amo-Chr16 137839360 137849260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3253 63 251 Calmodulin-binding Proteins AT2G36910 24.658 2.17e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3253 - - vun:114196181 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3253 16 137839360 137849260 Amo16g3253 16 137839360 137849260 ECH