Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3250 ATGCTTGGGTCCGTCCCTGCCTGCAGCCCAAGGCCTCCACCTATCACAGCCATTTTAATGGAGCACAATTCCGTTGAACCGAGTTGTCTCGTGCCAGATTCTTTCACCGGCGATTCGTTCGACGGAGAAAGTGAACAGTTGGACAAGTTACCAAATCATAGTTGCCTTGCTGAAGATGAAATACCAAGAGTTGGGATGCGGTTTGAGCATTTGAAGTTGGCCCAAGATTTTTATGCGACCTATGCAAAAAAAGTTGGTTTCATAAGTAAGATACGGGCCACAAATCTTGACAGGATGACAAAGCAACCGATCAACCAATCTATCCATTGCAATCGGGAGGGTTTCCGGGGGTCTCCTGTCAAAGCACCCATACGGAAGAACACAATGGTAGGTGTGGGATGCAGAGCAAGAATATATGCAAAGTTCGACAGGAAAAAGCATGATTGGGTCTTGTTGAAGGTTGAACTAAATCACTCGCACCCGTGTTCAACTAAGAAGGCAGTGCACTACCACGAGAACAGGGAGTTAACAATGCATGCGAAGTGTATCATTGAGGGTCAATTCTGGGCTCCCATGAGGAGTATGCAGAGGAGTGAGGGGATGCATTCATTCTTTGGTGGATACTTAAATTGTAAGACTAGTTTGGTCCAGTTTGTCCACGAGTTTGACAATGTCCTAGGAACGAAGGAGCAGAAGGAATTGGAGGACGATGCTGCATACTCTAGAGGTCTAATCCCATGTTCAACTAGATCAGTCATCGAGAGACAATTTCAAAAAGAGTATACCAACGAGATGTTTAGGGATGTCCAAACGGAGTTTGGCAAGAAGGCTGATTGCACTATTCGTGCCGTGGATGAACAGGTACTTTCATCTTACAAAGTTAATGAGGTACCTTCCTGCTATGTTTTACCTCGTTGGAGAAAGAACATAAAGCGCAAGCACACCTACATTAAGAGTAGCCACGATGTTAGACGTTCAGATGAAAGCCACAACATATTCAGAGGGTTGTGTGCACATTTCTACAACGTTGCGCAGGAATTCGTGGATTGTGATGATGAGGCAGACATGCTGTATAATGTTCTGGATGATGCAAGGGCCAAGCTAGTAGATTACCATGGCAGGATGCGAAATAACATCGTCCCTACTGCACACAATAGCATCGCCACAGACCCTTCAACCGTTTTCGGCACAGAGGACATTCAGGCCCCATCAAAAGAAAGCGGAAGAGTTTACGCAACGTATGATAATTGTGTAGAATCTACTGCAAATCAAGATTCGGAGGCTTCCGCTCAGCAGATTGCTATGCAAGGACTTGGTGGATTCATGTCGCTGTTAAACTCCTTCGACAATACCTAG 1356 0.455 MLGSVPACSPRPPPITAILMEHNSVEPSCLVPDSFTGDSFDGESEQLDKLPNHSCLAEDEIPRVGMRFEHLKLAQDFYATYAKKVGFISKIRATNLDRMTKQPINQSIHCNREGFRGSPVKAPIRKNTMVGVGCRARIYAKFDRKKHDWVLLKVELNHSHPCSTKKAVHYHENRELTMHAKCIIEGQFWAPMRSMQRSEGMHSFFGGYLNCKTSLVQFVHEFDNVLGTKEQKELEDDAAYSRGLIPCSTRSVIERQFQKEYTNEMFRDVQTEFGKKADCTIRAVDEQVLSSYKVNEVPSCYVLPRWRKNIKRKHTYIKSSHDVRRSDESHNIFRGLCAHFYNVAQEFVDCDDEADMLYNVLDDARAKLVDYHGRMRNNIVPTAHNSIATDPSTVFGTEDIQAPSKESGRVYATYDNCVESTANQDSEASAQQIAMQGLGGFMSLLNSFDNT* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3250 451 PANTHER OS03G0843700 PROTEIN 48 172 - -
Amo16g3250 451 PANTHER OS03G0843700 PROTEIN 288 373 - -
Amo16g3250 451 PANTHER OS03G0843700 PROTEIN 179 285 - -
Amo16g3250 451 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 288 373 IPR031052 GO:0006355
Amo16g3250 451 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 179 285 IPR031052 GO:0006355
Amo16g3250 451 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 48 172 IPR031052 GO:0006355
Amo16g3250 451 Pfam FAR1 DNA-binding domain 76 163 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3250 Amo-Chr16 137793827 137797499 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g3250 FAR1 7.3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3250 - - ahf:112763918 399.823