Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3248 ATGGATAATAATTATTCCATGTTGTTCCCATGTCCTCCTTCTTCTTCTTCTACTTCCTCGTACCAGATTTCAATTTCTAACAATAATAACGACAATAGTAATCAGCAGCATGGTTTCATTACTGGTTTGAATAATAATAATAACGGTCAAAGCTCCAATAATAGTGCATTTCTGGATTTGAAGTTTCATGAGCAGCAGCTGAAGAGATCAGAAGAAGATCAAGAAGAAGAAGAAGAGAGGATTAATGTGAGTGATCATCATCAGTTAGGGGGTGGTTCTTCATCATCATCCAACAAGAAGAAAGGAGAAAAGAAAATTAGAAAACCGAGATACGCGTTTCAAACCAGGAGCCAAGTTGATATTCTTGATGATGGTTATCGATGGAGGAAATATGGCCAAAAGGCTGTTAAAAACAACAAATTCCCAAGGAGCTACTATAGGTGCACACATCAAGGGTGCAACGTGAAGAAGCAAGTGCAACGTCTTACAAAAGATGAGGGTGTAGTGGTGACCACCTATGAAGGAGTGCACACTCACCCAATTGAGAAGACAACCGACAACTTTGAACACATTTTGAGTCAGATGCAAATATACACCCCCTTTTGA 606 0.3911 MDNNYSMLFPCPPSSSSTSSYQISISNNNNDNSNQQHGFITGLNNNNNGQSSNNSAFLDLKFHEQQLKRSEEDQEEEEERINVSDHHQLGGGSSSSSNKKKGEKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3248 201 MobiDBLite consensus disorder prediction 67 112 - -
Amo16g3248 201 MobiDBLite consensus disorder prediction 67 85 - -
Amo16g3248 201 ProSiteProfiles WRKY domain profile. 117 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g3248 201 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 82 197 - -
Amo16g3248 201 Pfam WRKY DNA -binding domain 123 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g3248 201 Coils Coil 60 80 - -
Amo16g3248 201 Gene3D WRKY domain 107 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g3248 201 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 82 197 IPR044810 GO:0003700
Amo16g3248 201 MobiDBLite consensus disorder prediction 1 55 - -
Amo16g3248 201 SUPERFAMILY WRKY DNA-binding domain 114 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g3248 201 SMART WRKY_cls 122 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3248 Amo-Chr16 137763523 137767277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3248 110 201 WRKY Transcription Factor Family AT5G13080 88.043 5.31e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo16g3248 WRKY 2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3248 - - aip:107648396 330.872