Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3246 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATGCATCTGAGTTGGACCTCTCTCACAAGAATAGTAACAGTGAAGAAGCTTCTTCAGTTGATTTGCGCCTGGCCGGCGAGGCCTCTGATTTGGAAAAGAAAGAAGAAGAATCATCAATAAGAACTGTGTCGTCTTCGTCGTCGTCGGCGAAGAGATCCCGTTTGCAAAATGGGCCACAGAATTTGTCTTGTTTGGTTGATGGATGCAGCTCTGATCTTAGTGATTGCAGGGAGTATCATAGGCGTCACAGGGTCTGCGAGAAGCACTCCAAAACCCCGGTTGTGTTGGTTGGGGGAAAGCAGCAAAGGTTTTGCCAACAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGCCGGAAGCGTCTTGATGGGCATAATAGGCGCCGGAGGAAACCTCAGCCGCCATCTTTCCTCATGAGTTCTGAGAAGTTCATGTACAATTACAAAGGACCTAGGATCCTGCATTTTGGTAACCCTCAACCATATGCAAACCCTATTGTGAGAAACATGTGGCCTGCTGCATCCATATCCGGAGCCAAATCTGAGTATGATCATCACCGGTTTCTATATCGAATCGACAAGCACAGGCAGGACAAGGAGCTTCTTCTCTGGCAAGATAATGTTCCAAAATCATTCAATGAATCCACAGCAATGCCGGGAACTCCAATCCACCAGCCTATCTGTGGCAGCACCATTGCCCCATCAACAACTGCAAAGCTCGGCCTTAAGAAGCCGCCGCCTTCTGATGGCAAACCTGGGTGCTTTGATGCAGGTTGTGCTCTCTATCTTCTGTCAACAATACAAACACAAACACAGTCTCCGTCCTCAGGGACCGAGCAATTCGATGCTGCGGTTGATAAGCCTGGTAGCCATCAAGTATTGGTTCTTGATGCTAACACAACCAACCTTCATTGCAATGGGATGCTGCAAATGGGACATGATGGATTGGTTGAAAATGGTGACTCACTTGCACTTCCATTTTTTTGGGAGTAG 1041 0.4755 MDWDWKEFAWDASELDLSHKNSNSEEASSVDLRLAGEASDLEKKEEESSIRTVSSSSSSAKRSRLQNGPQNLSCLVDGCSSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSFLMSSEKFMYNYKGPRILHFGNPQPYANPIVRNMWPAASISGAKSEYDHHRFLYRIDKHRQDKELLLWQDNVPKSFNESTAMPGTPIHQPICGSTIAPSTTAKLGLKKPPPSDGKPGCFDAGCALYLLSTIQTQTQSPSSGTEQFDAAVDKPGSHQVLVLDANTTNLHCNGMLQMGHDGLVENGDSLALPFFWE* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3246 346 Pfam SBP domain 74 147 IPR004333 GO:0003677
Amo16g3246 346 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Amo16g3246 346 SUPERFAMILY SBT domain 73 153 IPR036893 GO:0003677|GO:0005634
Amo16g3246 346 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 12 288 IPR044817 GO:0003677
Amo16g3246 346 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 299 346 IPR044817 GO:0003677
Amo16g3246 346 MobiDBLite consensus disorder prediction 51 67 - -
Amo16g3246 346 MobiDBLite consensus disorder prediction 38 67 - -
Amo16g3246 346 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Amo16g3246 346 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 12 288 - -
Amo16g3246 346 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 299 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3246 Amo-Chr16 137693636 137696659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3246 74 172 SBP-box Gene Family AT5G50670 66.667 1.26e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo16g3246 SBP 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3246 - - gmx:100798317 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3246 16 137693636 137696659 Amo16g3246 16 137693636 137696659 ECH
Amo16g3246 16 137693636 137696659 Amo06g2648 06 90136848 90140025 hybridization