Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3226 ATGGCCATGGAGGTTGACCCTAATCTTGAGTTAACATCCTTCTCCTTCTGGAAACCCCTTCGTCGTAGGTTCAACCCTGACTCTCCTTTCTTCGCTTCTGGCAACCTCCAACGTGAACTGCTAGCCAAACAGGTTGCGTTGGAATTAACGGAAGAGAATGAACAACTTGAGGATTGCATCCAAGATGGAAGGGAAGTTTTTTGCCCAATTGTTGGTTGTGGAACACGCCTGACTTCAATTGAGGATTTTGAAAATCACTATAATGTAAGGCATACTGCATCCTGTTCAGTTTGCTCCAGAGTCTACCCAACTTCTCGTCTGCTCAGCATACACTTATCTGAAGTTCATGATTCTTTCTTCCAGGCGAAACTTGCACGCGGCTATGATGTGTATGAATGCTTAGTGGAAGGCTGTGGTTTGAAATTCAAAACCTACAGTAGCAGGCAGCAGCATCTGGTTGACAAGCACAAATTCCCAACCTCATTCGAATTTTTCAAGAAGTCTCGACCATCAAAGAAACAGAGGTTAAAGTCTCAGCGCAAGCAATCTGTTCAGAAGGAGGATGCATCAGAAACAATGGAAGTCGAAAATGCAGCCATAGATGACCTCACTTCAGCAGTCTCTAGAATGAGCACTTCTGACTCCACTCCTTCCTCTATCAGCTTTGGTCGCCGCAACAAAGGGTTGACCTTTGCTCCTCGAGTTGTTCAGCAAAAAACCCAGCAAAGAGATAATTAG 738 0.4485 MAMEVDPNLELTSFSFWKPLRRRFNPDSPFFASGNLQRELLAKQVALELTEENEQLEDCIQDGREVFCPIVGCGTRLTSIEDFENHYNVRHTASCSVCSRVYPTSRLLSIHLSEVHDSFFQAKLARGYDVYECLVEGCGLKFKTYSSRQQHLVDKHKFPTSFEFFKKSRPSKKQRLKSQRKQSVQKEDASETMEVENAAIDDLTSAVSRMSTSDSTPSSISFGRRNKGLTFAPRVVQQKTQQRDN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3226 245 MobiDBLite consensus disorder prediction 173 245 - -
Amo16g3226 245 PANTHER UNCHARACTERIZED 13 241 IPR039258 -
Amo16g3226 245 ProSitePatterns Zinc finger C2H2 type domain signature. 133 156 IPR013087 -
Amo16g3226 245 MobiDBLite consensus disorder prediction 204 225 - -
Amo16g3226 245 PANTHER ZINC FINGER PROTEIN 511 13 241 - -
Amo16g3226 245 SMART c2h2final6 93 116 IPR013087 -
Amo16g3226 245 SMART c2h2final6 66 91 IPR013087 -
Amo16g3226 245 SMART c2h2final6 131 156 IPR013087 -
Amo16g3226 245 ProSitePatterns Zinc finger C2H2 type domain signature. 95 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3226 Amo-Chr16 137080221 137089788 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3226 2 239 C2H2 Transcription Factor Family AT5G14140 62.651 4.48e-107 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo16g3226 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3226 - - ahf:112697187 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3226 16 137080221 137089788 Amo16g3226 16 137080221 137089788 ECH