Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3216 ATGACGTGGCCATTTGGTTTTTCCTGGGAAGTGTCATCTCCCTCATTGTTGCAAGAACAGGAGGCAGATTTGCAACTTTATCTAACTCACATGAGAGATAAAACAGCAGATTACTTCATTCTCAAGGTACGAGTTAGGCATCAAACGTGTTGGACTACTCATCCTCAACAACCACAATCACATTATCCGCCGGTGTTAGGAGCCATTGATACGTTTGCATGTCACAGCTCAATTCTAATGCAAGCGCAAGAATTCCTTCAAAACGGTTCATCACACATGCAATTGCATTTTCCTGATGATGTTATACCAAATGTCTTGATTCATCACATGATGCCAGATGTCATATCCTACGCGGAAGACACAATTCAAACTCGTCCTTCCGGATTCCTCTACGAAAGACCTGATTTTCGTTTGTTCAGTTTGAATTTGGACATTATTATCCAGAATTCGTTTGTGTTTGTTGATGACTACGACGACATTATCACCGACTTCATCATTGAAGAGTCCATGGGAAATACTAATATTAAGATGGTTCCTACTTCGAAGAGTGCCATTGATTCTCTTGAGGAAGTGAAGCTTGAAAAGAATAACAATGCAACAGAGAGGTGCAGTATTTGTCTATCTGAATTTGATTACGGTGATGATGCAGAACAAGTTTTATCAATGCCTTGTAAGCATGTGTATCATCAAGAATGCATCATCCACTGGCTCAAGACTACGACAAGGAAAATAGGGGATGAGGAGGTGTGGCACAAGGTACTTTGCCAAGGGATGAGGGGCAGATGCTCCGTGTTCTGCGGTCTGGGTGAGGGTTTTTACTTTTTAGCGATAATCAGTGAAAGTACACTTAGCTTGGTTGAATGGTTACTTCATTCTTCTGTGTCGGGAATTGAATTCCGCCTTCTGCACGAAGCACCTAATCGGTCGGGAATTGAATTCCGCAACAACCTTGCTTTGCTGCCGCCGGTGGCGGATACCTTGGGAAACTCCCAGTCTCTGATCACCAACCACCTTTCTTCGAATGGTGCCGCCAAAACTGCACGTCTCGCTCAAACACCGCTTCCCCTCCCCAATCCCCATCACTCTCTCTGCCTTCACATCTCCATGAGGAAGCTAGGCGCTATTCCCGGGAAACACACCTTCCCCTTTCTCCTTAAAGCCTGCTCTAACATTCCCTCCCTGCCAGCCTGTACCCAGGTTCACACACACGTGCTGAAATTCGGAATGTGCTTTGATTCCCACGTGGCCAATGGTGTTACTCTGTCTCCGGTGATTTTGCCCGTGCACGCGATATGTTCGATGAAATGCCGGCCAGGAGTTTGA 1323 0.455 MTWPFGFSWEVSSPSLLQEQEADLQLYLTHMRDKTADYFILKVRVRHQTCWTTHPQQPQSHYPPVLGAIDTFACHSSILMQAQEFLQNGSSHMQLHFPDDVIPNVLIHHMMPDVISYAEDTIQTRPSGFLYERPDFRLFSLNLDIIIQNSFVFVDDYDDIITDFIIEESMGNTNIKMVPTSKSAIDSLEEVKLEKNNNATERCSICLSEFDYGDDAEQVLSMPCKHVYHQECIIHWLKTTTRKIGDEEVWHKVLCQGMRGRCSVFCGLGEGFYFLAIISESTLSLVEWLLHSSVSGIEFRLLHEAPNRSGIEFRNNLALLPPVADTLGNSQSLITNHLSSNGAAKTARLAQTPLPLPNPHHSLCLHISMRKLGAIPGKHTFPFLLKACSNIPSLPACTQVHTHVLKFGMCFDSHVANGVTLSPVILPVHAICSMKCRPGV* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3216 440 Pfam Ring finger domain 202 241 IPR001841 -
Amo16g3216 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 238 - -
Amo16g3216 440 SMART ringv_2 202 256 IPR011016 GO:0008270
Amo16g3216 440 SUPERFAMILY RING/U-box 185 242 - -
Amo16g3216 440 ProSiteProfiles Zinc finger RING-type profile. 203 259 IPR001841 -
Amo16g3216 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 244 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3216 Amo-Chr16 136884248 136886396 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3216 174 239 C3H Transcription Factor Family AT1G18760 37.879 1.04e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3216 - - adu:110276959 346.665