Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3211 ATGACGTCGCCATTTGGTTTTTCCTGGGAAGTGTCATCTCCCTCATTGTTGCAAGAACAGGAGGAAGATTTGGAACTTTATCTAACTCTCATCGGAGATAAAATAGCAGATTACTTCATTCTCAAGGTACGAGTTAGGCATCAAACGTGCTGGACTACTCATCCTCAACAACCACAATCACATTATCCAGTGTTAGGAGCCAATGATACGTTTGCATGTCACAGCTCAATTCTAATGCAAGCGCAAGAATTCCTTCAAAACGGTTCATCACACATGCAATTGCGTTTTCCTGATGATGTTATACCAAATGTCTTGATTCATCACATGATGCCAGATGTCATATCCTACGCGGAAACCATACTTCAAACTCGTCGTTCCGGATTTCTCTACGAAAGACCTGATTTTCGTTTGTTCAGTTTGAATTTGGACATTATTATCCAGAATTCGTTATTATTTGTTGATGAGTACGACGACATTATCACCGACTTCGTCATTGAAGAGTCCATGGGAAATACTAATATTAAGATGGTTCCTACTTCGAAGAGTGCCATTGATTCTCTTGAGGAAGTGAAGCTTGAAAAGAATAACAATGCAACAGAGAGGTGCAGTATTTGTCTATCTGAATTTGATGACGGTGATGATGCAGAACAAGTATTATCAATGCCTTGTAAGCATGTGTATCATCAAGAATGCATCATCCGCTGGCTCAAGACTAGTCATTTATGCCCTTTATGTCGCTATCCGATGCCAACTAATTAA 759 0.3979 MTSPFGFSWEVSSPSLLQEQEEDLELYLTLIGDKIADYFILKVRVRHQTCWTTHPQQPQSHYPVLGANDTFACHSSILMQAQEFLQNGSSHMQLRFPDDVIPNVLIHHMMPDVISYAETILQTRRSGFLYERPDFRLFSLNLDIIIQNSLLFVDEYDDIITDFVIEESMGNTNIKMVPTSKSAIDSLEEVKLEKNNNATERCSICLSEFDDGDDAEQVLSMPCKHVYHQECIIRWLKTSHLCPLCRYPMPTN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3211 252 ProSiteProfiles Zinc finger RING-type profile. 202 246 IPR001841 -
Amo16g3211 252 SMART ringv_2 201 246 IPR011016 GO:0008270
Amo16g3211 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 251 IPR013083 -
Amo16g3211 252 Pfam Ring finger domain 201 246 IPR001841 -
Amo16g3211 252 SMART ring_2 202 245 IPR001841 -
Amo16g3211 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 251 - -
Amo16g3211 252 PANTHER F6A14.12 PROTEIN-RELATED 101 251 - -
Amo16g3211 252 SUPERFAMILY RING/U-box 184 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3211 Amo-Chr16 136831599 136832357 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3211 173 250 C3H Transcription Factor Family AT1G18760 42.308 1.20e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3211 - - adu:110276959 375.555