Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3209 ATGACGTCGCCATTTGGTTTTTCCTGGGAAGTGTCATCTCCCGCATTGTTCCAAGAATCGGAGGCAGATTTGGAACTTTATCTAACACTCATCGGAGATAAAATAGCAGATTACTTCATTCTGAAGGTACGAGTTAGGCATCAAACGTGCTGGACTACTCATCATCAACAACCACAATCACATTATCCAGTGTTAGGAGCCATTGATACGTTTGAATGTGACAGCTCAATTCTAATGCATGCTCAAGAATTCCTTCAAAACGGTTCATCACACATGCAATTGCATTTTCCTGATGATGTTATACCAAATGTCTTGATTCATCACATGATGCCAGATGTCATATCCTACGCGGAAGCCACAATTCAAACTCGTCGTTCCGGATTTCTCTACGAAAGACCTTATTTTCGTTTCTTCAGTTTGAATTTGGACATTATTATCCAGAATTCGTTTGTGTTTGTTGATGATGACTACGGCGACATTATCACCGACTTCATCGTTGAAGAGTCCATGGGAGATACTAATATTAAGATGGTTCCTACTTCGAAGAGTGCCATTGATTCTCTTGAGGAAGTGAAGCTTGAAAAGAATAACAATGCAACAGAGAGGTGCAGTATTTGTCTAACTGAATTTGATTACGGTGATGATGCAGAACAAGTATTATCAATGCCTTGTAAGCATGTGTATCATCAAGAATGCATCATCCACTGGCTCAAGACTACACCTGATCGGTCGGGAATTGAATTCCGGAACAACCTTGCTTTGCTGCCGCCGGTGGCGGATACCCTGGGAAACTCCGAGTCTCTGATCACCAACCACCTTTCTTCGAATGGTGCCGCCAAAACTGCACGTCTCGCTCAAACACCGCTTCCCCCCCCCAATCCCCATCACTCTCTCTGCCTTCACATCTCCATGAGGAAGCTAGGCGCTATTCCCGGGAAACACACCTTCCCCTTTCTCCTTAAAGCCTGCTCTAACATTCCCTCCCTGCCATCCTGTACCCAGGTTCACACACACGTGCTGAAATTCGGGATGTGCTTAGATTCCCACGTGGCCAATGGTGTTACTCTGTCTCCGGTGATTTTACCCGTGCACGCCATATGA 1101 0.4496 MTSPFGFSWEVSSPALFQESEADLELYLTLIGDKIADYFILKVRVRHQTCWTTHHQQPQSHYPVLGAIDTFECDSSILMHAQEFLQNGSSHMQLHFPDDVIPNVLIHHMMPDVISYAEATIQTRRSGFLYERPYFRFFSLNLDIIIQNSFVFVDDDYGDIITDFIVEESMGDTNIKMVPTSKSAIDSLEEVKLEKNNNATERCSICLTEFDYGDDAEQVLSMPCKHVYHQECIIHWLKTTPDRSGIEFRNNLALLPPVADTLGNSESLITNHLSSNGAAKTARLAQTPLPPPNPHHSLCLHISMRKLGAIPGKHTFPFLLKACSNIPSLPSCTQVHTHVLKFGMCLDSHVANGVTLSPVILPVHAI* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3209 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 243 IPR013083 -
Amo16g3209 366 PANTHER F6A14.12 PROTEIN-RELATED 105 239 - -
Amo16g3209 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 105 239 - -
Amo16g3209 366 ProSiteProfiles Zinc finger RING-type profile. 203 241 IPR001841 -
Amo16g3209 366 Pfam Ring finger domain 202 241 IPR001841 -
Amo16g3209 366 SUPERFAMILY RING/U-box 185 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3209 Amo-Chr16 136810688 136812955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3209 166 242 C3H Transcription Factor Family AT1G18760 37.179 2.27e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3209 - - adu:110276959 359.762