Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3203 ATGGCGGGAGAGAACACTATGAAGCAAAGGCCTCTTCCTGTTCCGTCTTCTTCTCCGTCAATGAGAGCGAAAATGGAGGAAACAACAAAGGAAAAATGCTGGAGAATGGAAGTCGACGAGAATCTGAAGCGCCTCCAGTCCCTTCAGTTCGGCGCTGACCACGCCCTCACCACCCAGGACTTTTCCTCCGCCTATGTCCTCGGCCTCCGCCTCCTCGGCTTCCTCGACTCCCACTCCCATTCCGACGTCGACGAAGCCTTCATCCACCCTATTCGCCGCCAAACCCTCTCCACTCTTGCCTCCGCTCGCCGTTCCCTCACTCCTGATTCCGATCGTCTAGCTTTTGAACAAGCAAAGAAGTCTCAGGGACGCGTTTTTGCCACATCAGGTGAAATTGACATTGACAAGATCCGCAAGTCGAAGTACTTTCGAGCTCTTCTCGCGCAATCTAATGAAATTGACGAGAATCAGTTGGGTGAACAAATTGGGAAGCAAGACGGATCGTGCGAGAAGCCGTCAAAGGAAATGGTGCAAGCGAAGCTGACGTCAGCGTATGGGAAGAGTGCATTGAGGAATGATAATGCTACGAAGAACTTCTTCAATTTGAAGGATAATGGTTCTGAGGAATGCGTTGTTGTTGAGAGGCCTCAATTTCAGAACAGCCATACAAAGGGTTCTACTATTTCTTCTTTCTTGCAGGTTGAAGAGGAAGAAAGAATGAACTCGTTTGGGAAGAAACGTGTGCATATGGAAATTAATAATAGTCCCAAAGTTGGTTATTCGAGGTCACCTTCAAGCAAAGAGGATGTTAACCCTGAAGTTTCTGGCAACGGATTTGTTACTGCTAGAGCCAAATTGGAAATGGAAGCAAGGCAAAAGAGAGGGGCAGTTGGTTCACCCAATGCACCTGTATCCCCACAAGGCGATAATAATCCTTCCAATAGGTTATATAGTGGGAGATCCTATGGCATTTCACGACGTGGCTTCCGTGGTAATTTTGTCCCACCCATTAAATCCAATGGGAGTAATGTTGGAAATGTGACTTCACGAATTGCTGGAAAGGGAGATGATTCTTTAGATGATTCTACCAAAAGATGTTTGGAAATGCTGTGTGGGCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGAACCTCGCCTCATCGAGCATGTTAGTAATGAGATTATGGATAGAGATCCTAATGTCCGTTGGGATGACATTGCTGGGTTGGAGCATGCCAAGAAATGTGTAACTGAAATGGTTATATGGCCTCTGCTACGTCCAGACATATTTAAGGGATGCCGGTCACCTGGTAGAGGTTTGCTCTTATTTGGTCCTCCGGGAACTGGTAAAACGATGATAGGCAAAGCAATAGCAGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGTTCATTGACAAGCAAGTGGATTGGTGAAGGCGAAAAGCTAGTAAGAGCCCTTTTTGGAGTTGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAGATAGATTCACTCCTCTCTCAGCGCAAGTCAGATGGTGAGCATGAATCAAGTAGAAGGCTTAAGACACAATTTCTCATAGAAATGGAAGGCTTTGATAGTGGCAGCGAACAGATTCTACTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCAAGAAGGAGACTTACCAAAAGACTATATATCCCCCTACCCTCCTCAGAAGCTAGAGCTTGGATTATACGTAACCTACTAGAGAAAGATGGATTGTTCAGTCTATCAAGGGAGGAAATAGATATCATATGTAACATAACCGAAGGTTATTCAGGATCTGACATGAAAAACTTAGTGAAGGATGCATCTATGGGTCCCCTAAGAGAGGCCCTAAAACAGGGTATAGAAATTTCAAAGTTGAAGAAGGAGGATATGAGGCCAGTAACCCTTCAGGACTTCGAGAATGCCCTAAAAGAAGTGAGGCCTTCTGTTTCCACTAACGAACTTGGCACCTACGATGAATGGAACAACCAGTTTGGAAGCCTATCACGGTAG 2052 0.4576 MAGENTMKQRPLPVPSSSPSMRAKMEETTKEKCWRMEVDENLKRLQSLQFGADHALTTQDFSSAYVLGLRLLGFLDSHSHSDVDEAFIHPIRRQTLSTLASARRSLTPDSDRLAFEQAKKSQGRVFATSGEIDIDKIRKSKYFRALLAQSNEIDENQLGEQIGKQDGSCEKPSKEMVQAKLTSAYGKSALRNDNATKNFFNLKDNGSEECVVVERPQFQNSHTKGSTISSFLQVEEEERMNSFGKKRVHMEINNSPKVGYSRSPSSKEDVNPEVSGNGFVTARAKLEMEARQKRGAVGSPNAPVSPQGDNNPSNRLYSGRSYGISRRGFRGNFVPPIKSNGSNVGNVTSRIAGKGDDSLDDSTKRCLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIRNLLEKDGLFSLSREEIDIICNITEGYSGSDMKNLVKDASMGPLREALKQGIEISKLKKEDMRPVTLQDFENALKEVRPSVSTNELGTYDEWNNQFGSLSR* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3203 683 Gene3D - 573 659 - -
Amo16g3203 683 MobiDBLite consensus disorder prediction 303 320 - -
Amo16g3203 683 Pfam ATPase family associated with various cellular activities (AAA) 442 572 IPR003959 GO:0005524|GO:0016887
Amo16g3203 683 PANTHER AAA DOMAIN-CONTAINING 90 680 - -
Amo16g3203 683 Gene3D - 401 675 IPR027417 -
Amo16g3203 683 MobiDBLite consensus disorder prediction 1 24 - -
Amo16g3203 683 CDD AAA 435 572 - -
Amo16g3203 683 PANTHER FIDGETIN-LIKE PROTEIN 1 90 680 - -
Amo16g3203 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 678 IPR027417 -
Amo16g3203 683 Pfam Vps4 C terminal oligomerisation domain 645 679 IPR015415 -
Amo16g3203 683 MobiDBLite consensus disorder prediction 256 272 - -
Amo16g3203 683 SMART AAA_5 438 574 IPR003593 -
Amo16g3203 683 ProSitePatterns AAA-protein family signature. 544 563 IPR003960 GO:0005524|GO:0016887
Amo16g3203 683 MobiDBLite consensus disorder prediction 254 276 - -
Amo16g3203 683 MobiDBLite consensus disorder prediction 290 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3203 Amo-Chr16 136619449 136625096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3203 357 681 Calmodulin-binding Proteins AT3G56690 31.563 7.34e-42 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3203 K22766 - gmx:100776024 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3203 16 136619449 136625096 Amo16g3203 16 136619449 136625096 ECH