Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3202 ATGGAAGATATTGTGTCTGAGGTGTCCCCAGATATTTCTAAAGCTATGCCGCTTAAGCGCTTCAAATTCTCACCTGGAATGTTTATAAAGCAGACTCAAGATTATGGGGTTGATGAGGTCACATGGAAGATATCTCCAGTGAACGAAAGACTCCAAGCTGTTTCTAAACATGTGCCGAATACTTTTCGGGATAAAGATGACAAGGTTGACGAATTGCTTACTTCACCAACTCCCAAGGCTTCTGCAAAAGCTCTACCTTCAATGAGTAAATTAGGCTTGAAAAGGATAAACCCAGAACAAAGTGTGGATTTTGACACCAATCCAARTACTCTGAGCTACWCTGGAGTATCTAGCAGACAGAGTCCCTTCAGGACTCCACCCTCTTTGTCTCATTGTCCCGATAAGGTGCATCCTATTAATGACATTCAATGCACTGGACCATCTGATCAACTTTATCTCAGACAGCACAAAAAGACTTTGCTTGAACTGTTAGATCAAGTTGAAGATGCCATTGCTGTTGATGACGCTACTGTTTGTAACAAGGGAACTGATTCTTTAAAATGTTGTGACGGCATTGCTGATGAGCTCCCTGTTAGAGCCAACCATGCTGAAGAAAGAACAAGATCACATAGTTCTAAAGAGGATATGGTTGCTGTCTCTAGTTCTAGCTATCTGGTTTTGCAGGTGTCTGAAAATTCTAGGTCTGCTGATTCATCTGCTGCTGATGCTCGATCCCCATACAAGGTGCTTCGCTTACTAAATGAGCAAACTGGAGAGGAGCGGGCTGTAAACTTGAGGGATGAGTGGTTTTTCAGTGTAATTGCACCTGGAGATACTGTAAACATAATCGGTCAATTTGATGAAGGAGGAAGTTGTGATATAGGCCATGAAAATAATTTCTTGATTGTGCACCCAGACATTCTGCTGTCTGGAACAAGGGCTGGGCTCACAGAAGACAATCCATCCATTGACTTCTTGGAAGGTTACACAGAAGTGGTATTACTTAGGAACATTGAGAGTCTGTATGCTTGTGGAGTAAATGAAAGTGATGTTCGGAAAACCTTGATTGATGCTGTCCCGAGAATATTGAGTTGGATTTTACGGTTCACAAATAAGGAGGTAATTGATATTGAAGAGATGGCATGGGCTCCTAAATATGGTTTGAAAGGGATGATTGATGCTTCAGTCAGAGTCACAGTACAATCAGTAAAAGATGAACTTGAGGAGAAGATTATGCCAGTAGAGTTCAAAACCGGGAAATCACCAGCTGGCCAGGCACGACTTAGATTAATGATATTTTTTATTTACAACTCCTGCATATTGTACCTGCAGTCATCAGCAGAACACAATGCTCAAGTAATCTTATACACTCTTCTGATGTCTGAAAGGTATCAAAACACCATTGATTCTGGTCTTCTATATTATCTTCAATCAGATCAGACACAGGGTATTGTGGCTCAAAGATCTGACTTAGTTGGCCTAATAATGCGACGGAACGAGCTAGCAAGTGATATTCTTAAGGCATTAACCTCGCAACAACTTCCACCAATGTTAAAGAGTCCTGGCATTTGCAAAGGTTGTCGCCATCTTAATGTTTGTAGCATTTATCACAAGTTACATGGTGGAAGCACAAAAAGCAGTGGATTGGAAGATGTATTTGATTCTCTTACTGACCACCTTACATCTTCCCATTCCAAGTTCCTCTGCCATTGGGATCGGCTGATTGACTTGGAAGCTAAGGAGACTGAGCTTTTAAGGAAAGAGATGTGGCGATCACATAGTTTAAAAGCTCCAAACTGTGGTAGCCTTTCTTCTATTGTTCTCGATGCTTCATATGGAATTCCTCATCAGAAATCTGTCAAAGATAATCGCTTTGTTTATCGTTTTGTAAGACAAGATAATTGTCCCTCTGGAGTTTCTGACGGTGATCATTGTAGTACCTATTCAACAAATTTAGATCTTACACTTGGAAGTGGAGACTATGTGGTTTCCTTTTCAAAACGCTTACGAATTCCTGGAAGATGTTCCACTACACATGATCTCCTTCAACAGGTTTGGAGAATTGACAAGGATGAATTTGTGACTTCGTTTGCATCTATGAGGTTTAATCTTGCACAACTTTTTCTACAAAATGATCGGAGTACTCATCTGCGGAGGATGATTGTTGATCTTGAGGCTCCTAGGTTTGACTGTGAATCTATAGTCAGTCAGGATCCAGCAATATCATATGTTCGGTCGAAGAAATCTTTGAATGATGATCAATGTAAAGCAATTCTCAAGATACTTGCAGCAAAAGATTATGCGCTTATATTAGGAATGCCTGGAACAGGAAAGACTTCTACTTTGGTTCATGCTGTGAAAGCCTTGCTGGAAAGGGATTCTTCCATTTTGCTGACAGCCTATACAAACTCCGCAGTTGATAATTTACTCATGAAATTAAAAGCACAGGACATTGATTTTGTTCGGATTGGAAGACCAGAAGCAGTGCATGAGGTGGTCAGAGGACACTGCCTTTCAGCAACAAGTATACAAAATGTTGAAGATATCAAAATAAGGTTAGGTCAAGTCAGAGTTGTTGCAGTTACTTGTCTTGGCATTTCCAGTCCCTTGCTTGCCAACATGAGATTCGATGTATGCATTATGGATGAAGCTGGACAGACAACCCTACCTGTGTCCTTGGGCCCCCTAGCATTTGCCTCAGTGTTTGTACTTGTTGGGGATCATTATCAATTGCCTCCACTTGTCCAGAGCATAGAGGCCCGAGAGAATGGCATGGGGATAAGTTTGTTCTGTAGGCTCTCCGAAACACATCCAGAGGCAATTGCGGAATTACGGAGCCAGTACCGGATGCGTCAAGGCATTATGGACTTGTCAAATGCCTTGATATATGGTGACAGGTTGAGGTGTGGTTCATCTGAAATAGCTAATGCAACACTTGAGTTTTCTAATTTAAACTGTGGCTTGCCTTGGCTAGAAGATGTTTTAAATCCAAGCAGGCCAGTGATTTTTATTGATACTGACATGTTACCCGCTTTGGAGGTAAGAGATCAGAAGACTGTCAATAATCCAGTTGAAGCTCACATAATTGCCGAGGTTGCAACGGAATTGGTTAGAAATGGAATTGTAGGAGAGCAGATTGGTGTTATTACCCCCTATAATTCACAGGCAAACCTCATCCGGAAAGCAGCTTCCGAGACTTCCATGGAGATACATACCATTGACAAATATCAGGGTAGAGATAAGGATTGCATATTAGTCTCTTTCGTAAGATCTAGTGAAAACCCAACGAACCTTGCTGCTTCTCTTCTCGGAGACTGGCACAGGATAAATGTGGCTCTCACTCGCGCTAGGAAAAAGTTGATCATGGTGGGGTCTCGTAGAACTCTTTCAAAGGTTCTGCTACTGAAACTTCTCATTAAGAACGTTGAGGAACAATGTGGAATTATAAGTGTTTCGAAGAAGGATATCGTTCCAAAAGGTCAGCTCCGAAAATGTTCTCAAATGGGTTGA 3510 0.4145 MEDIVSEVSPDISKAMPLKRFKFSPGMFIKQTQDYGVDEVTWKISPVNERLQAVSKHVPNTFRDKDDKVDELLTSPTPKASAKALPSMSKLGLKRINPEQSVDFDTNPXTLSYXGVSSRQSPFRTPPSLSHCPDKVHPINDIQCTGPSDQLYLRQHKKTLLELLDQVEDAIAVDDATVCNKGTDSLKCCDGIADELPVRANHAEERTRSHSSKEDMVAVSSSSYLVLQVSENSRSADSSAADARSPYKVLRLLNEQTGEERAVNLRDEWFFSVIAPGDTVNIIGQFDEGGSCDIGHENNFLIVHPDILLSGTRAGLTEDNPSIDFLEGYTEVVLLRNIESLYACGVNESDVRKTLIDAVPRILSWILRFTNKEVIDIEEMAWAPKYGLKGMIDASVRVTVQSVKDELEEKIMPVEFKTGKSPAGQARLRLMIFFIYNSCILYLQSSAEHNAQVILYTLLMSERYQNTIDSGLLYYLQSDQTQGIVAQRSDLVGLIMRRNELASDILKALTSQQLPPMLKSPGICKGCRHLNVCSIYHKLHGGSTKSSGLEDVFDSLTDHLTSSHSKFLCHWDRLIDLEAKETELLRKEMWRSHSLKAPNCGSLSSIVLDASYGIPHQKSVKDNRFVYRFVRQDNCPSGVSDGDHCSTYSTNLDLTLGSGDYVVSFSKRLRIPGRCSTTHDLLQQVWRIDKDEFVTSFASMRFNLAQLFLQNDRSTHLRRMIVDLEAPRFDCESIVSQDPAISYVRSKKSLNDDQCKAILKILAAKDYALILGMPGTGKTSTLVHAVKALLERDSSILLTAYTNSAVDNLLMKLKAQDIDFVRIGRPEAVHEVVRGHCLSATSIQNVEDIKIRLGQVRVVAVTCLGISSPLLANMRFDVCIMDEAGQTTLPVSLGPLAFASVFVLVGDHYQLPPLVQSIEARENGMGISLFCRLSETHPEAIAELRSQYRMRQGIMDLSNALIYGDRLRCGSSEIANATLEFSNLNCGLPWLEDVLNPSRPVIFIDTDMLPALEVRDQKTVNNPVEAHIIAEVATELVRNGIVGEQIGVITPYNSQANLIRKAASETSMEIHTIDKYQGRDKDCILVSFVRSSENPTNLAASLLGDWHRINVALTRARKKLIMVGSRRTLSKVLLLKLLIKNVEEQCGIISVSKKDIVPKGQLRKCSQMG* 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3202 1169 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2 80 1144 IPR026851 GO:0017108|GO:0017116|GO:0033567
Amo16g3202 1169 Gene3D - 678 848 IPR027417 -
Amo16g3202 1169 Gene3D - 849 947 IPR027417 -
Amo16g3202 1169 CDD DEXXQc_DNA2 749 949 - -
Amo16g3202 1169 Pfam Domain of unknown function DUF83 405 534 IPR022765 -
Amo16g3202 1169 PANTHER DNA2/NAM7 HELICASE FAMILY 80 1144 IPR045055 -
Amo16g3202 1169 CDD SF1_C_Upf1 950 1128 IPR041679 -
Amo16g3202 1169 Pfam AAA domain 927 1126 IPR041679 -
Amo16g3202 1169 Gene3D - 348 535 IPR011604 -
Amo16g3202 1169 Pfam AAA domain 750 840 IPR041677 GO:0004386
Amo16g3202 1169 Pfam AAA domain 853 917 IPR041677 GO:0004386
Amo16g3202 1169 Gene3D - 948 1155 IPR027417 -
Amo16g3202 1169 Pfam DNA replication factor Dna2 255 313 IPR014808 -
Amo16g3202 1169 Pfam DNA replication factor Dna2 316 398 IPR014808 -
Amo16g3202 1169 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 748 1133 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3202 Amo-Chr16 136583164 136603888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3202 1 891 Core DNA Replication Machinery Family AT1G08840 50.696 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3202 K10742 - gmx:100799415 1540.4