Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3201 ATGCCGGAGGAAACGACGTCGATCGACTATGTCATGGAGGCAGCCTCGGGGCCACACTTCTCCGGTCTCCGCCTCGACGGCCTCCTCTCCTCCCCGCCCTCCTCCTCTACCTCCTCTCCCGCCCATCGCTTCTCCTCCGCACCCGATCTTTCCTCCGCCCTATCCCCCGATTCTCTCAACCAGCCCTTCGTTATTGGTGTTTCTGGAGGTACTGCTTCTGGGAAGACCACTGTCTGTGACATGATCATTCAGCAGCTTCATGATCACCGCGTTGTTCTTGTCAATCAGGATTCATTTTACCGTGGTTTGAGACCTGAAGAGTTGGAAAGAGTTCACGAGTACAATTTTGATCATCCAGATGCCTTCGACACCGAACAGCTATTAGAGTGCATGAGAAAGCTTATTGCTGGCCAGAGTGTGCAGGTGCCAATTTATGACTTTAAGAAGCACCAACGGTGTTCAGATAGTTTTCGGCAGGTCAATGCTTCTGATGTCATTATATTGGAGGGAATTCTTGTATTCCATGATCAGGATGTCCGGGATTTAATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTGAGACTAGCTCGTAGGATTAGACGTGACACAGTGGAGCGAGGGAGGGACATAAACTCTGTTCTTGAACAGTACGCAAAGTTTGTTAAGCCTGCCTTTGATGATTTTGTTCTACCGTCAAAGAAGTATGCTGATATAAGGGGGATGCATACATTGATTCGTGACAAAGACATATCAAAGCATGATTTCGTATTTTATTCTGATCGGCTTATTCGTCTGGTTGTTGAGCATGGTCTTGGTCATCTCCCATTCACCGAAAAGCAAGTCGTTACTCCAACAGGATCTGTCTACACTGGTGTTGATTTCTGCAAGAAACTATGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAGAATGCACTTCGTGCATGTTGTAAGGGCATTAAAATAGGGAAAATTCTGATTCATCGGGATGGAGACGATGGACAACAGCTTATATATGAGAAGCTTCCCAAGGATATTTCAGAACGGCATGTCTTGCTTCTCGATCCTGTCCTTGCTACAGGTAACTCCGCCAACCAAGCAATTGAGTTACTCATTCAGAAAGGAGTTCCAGAGTCCCACATTATATTCCTGAATCTCATTTCTGCTCCTGAGGGGATCCATTGTGTGTGTAAACGGTTTCCCTCACTGAAAATTGTCACATCTGAGATTGATGCCGCCTTAAACGATGAGTTTCGGGTTATCCCTGGATTGGGCGAGTTTGGGGATCGCTACTTTGGTACAGATGATTGA 1320 0.4644 MPEETTSIDYVMEAASGPHFSGLRLDGLLSSPPSSSTSSPAHRFSSAPDLSSALSPDSLNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLRPEELERVHEYNFDHPDAFDTEQLLECMRKLIAGQSVQVPIYDFKKHQRCSDSFRQVNASDVIILEGILVFHDQDVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADIRGMHTLIRDKDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDDGQQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDAALNDEFRVIPGLGEFGDRYFGTDD* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3201 439 Gene3D - 40 241 IPR027417 -
Amo16g3201 439 SUPERFAMILY PRTase-like 240 436 IPR029057 -
Amo16g3201 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 240 IPR027417 -
Amo16g3201 439 CDD UMPK 64 240 IPR000764 -
Amo16g3201 439 Pfam Phosphoribulokinase / Uridine kinase family 64 240 IPR006083 GO:0005524|GO:0016301
Amo16g3201 439 PANTHER URIDINE KINASE 240 436 - -
Amo16g3201 439 Pfam Uracil phosphoribosyltransferase 240 437 - -
Amo16g3201 439 CDD PRTases_typeI 295 410 IPR000836 -
Amo16g3201 439 PRINTS Uridine kinase signature 62 79 - -
Amo16g3201 439 PRINTS Uridine kinase signature 230 243 - -
Amo16g3201 439 PRINTS Uridine kinase signature 208 219 - -
Amo16g3201 439 PRINTS Uridine kinase signature 137 152 - -
Amo16g3201 439 PRINTS Uridine kinase signature 92 103 - -
Amo16g3201 439 PRINTS Uridine kinase signature 194 204 - -
Amo16g3201 439 Gene3D - 242 438 IPR029057 -
Amo16g3201 439 TIGRFAM udk: uridine kinase 62 240 IPR000764 -
Amo16g3201 439 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 240 IPR029930 GO:0004849|GO:0044206
Amo16g3201 439 MobiDBLite consensus disorder prediction 25 51 - -
Amo16g3201 439 MobiDBLite consensus disorder prediction 28 51 - -
Amo16g3201 439 PANTHER URIDINE KINASE 16 240 - -
Amo16g3201 439 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 240 436 IPR029930 GO:0004849|GO:0044206
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3201 Amo-Chr16 136537754 136544127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3201 1 439 PRT Gene Family AT5G40870 77.847 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3201 K00876 - gmx:100780005 744.577