Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3180 ATGAAAGCATTGATCTGTTTCTTCTTCTTTGTGTTTGTCCCCACATCGGGGAATGACCTCTTAAGCTGTGAGACAACTTCACCAGATGCATCTGGCTACAGCTGCATACAAAATAATAAAAGCTCTATTCAATGTGCAACATTTGCACTCATTCACACAAATCCATACTTTTCTTCTCTCTCAAACCTCACTCATTACTTGGGACTTAACCGTTTTGTGATAGCAAAATCAAATGGTTTCTCTCCAGAAAACACTGAAATCCTCTCCAATGATCAACCCCTTTTAATACCAATTGATTGCAAGTGCAGCAAACATGGTTTTTTCTATGCTGAATTGACCAAAACCACCATCAAAGGTGAGAGCTTCCATGGCATTGCTGAATCACTTGAAGGCTTAACTACCTGCAAGGCCATAAAAGATCGAAACCCCGGCGTGTCGCCTTCGAATCTCGACGGAGAATTCAAGTTGCTGATTCCATTAAGATGTGCATGCCCAGTTTCATCTTCTCAAGAACAAAGGGCTCTGCTTTCTTATCCTGTAAGTAAAGGCGACACGGTTTCGAATTTGGCTTCAAAGTTTAATGTTACCATAGAATCCATAATTTCTACAAATAATTTATCATCATCAGAAGGGTTTGAAACTCAAAGCCTTACACCTTTTACATGTCTTCTGATTCCATTGTTAAATAATAATCCTGTGGCTAAACCCTCTAATAATCCTGTGATTAGTCCACATAAGAAAACAAAAATGTGGAGGACTGAACTGTGTATTGGCCTAGCCGGTGTTGCACTTGGACTCTTCATTGCTTCGTTAGTGGGATTCTTTTTCATCAGATTGAAGAACAAGAAGCAGAGTGTGAAGAACAATAATAAGTGTAAAGAGTTAGATATGGAGCTTCAACATCTGAATCTCAGTGTAAGAACAACCAGTGACAAAAAAGTCTCATTCGAGGTACCTCACGAGGGGAAGATCCTAGAAGCTGCGACGCCTCGAAAGATGTTCCTTGAGACATACACAAGGGAGGAAATTCGGAACGCAACAGAAGACTTCAGCTCAAGCAATCACATTGAGGGGCCGGTGTTCCATGGCCGATTGAACGGCAAGAACATAGCAATAAAAAGAACAACGAACGATGTCGTTTCGAAGATAGAGTTCGGCCTCTTCCACCACTCAGTTCAACGTCACCCCAACATTCTAATGCTTCTTGGAACAACAAGCTTGCTAGAGGGTCCAGATTCCTACCTGGTTTTCGAGTATGCGAAAAACGGATCCTTGAAAGACTGGCTTCACGGTGGCTTGGCAATCAAGAATCAGTTCATTGCTTCATGCTATTGTTTCTTGACGTGGAGGCAGAGGCTCCGGATCTGCCTCGACATAGCCGGCGCCTTGCAGTACATGCACCATGTGATGATCCCAAGCTATGTTCATAGGAACATAAAGAGTAGGAACATTTTCTTGGATGAAGAGTTTGGCGCAAAACTTGGGAATTTCGGTATGGCAATGTGTGCTGAGAATGAAACTGAAGATCCACATTTCTATTCCACAAACCCTGCTTCTTGGAGCCTTGGTTATTTGGCACCTGAATTTGTTCATCAAGGTGTAGTTTCACCAAGCATTGATGTGTTTGCTTATGGGGTGGTTTTGTTGGAGGTTTTGTCCGGCCAAACACCCATAAGCAGGCCTAATGACAAGGGTGAAGGGAGTGTTTGGCTCACGGATAAAATCCGGTCGATTTTGGCGTCGGAGAAGAATGCAAGTGAGCTGAGGGAGTGGGTTGATAGTGCCTTAGGGGAGAACTATTCGTTCGATGCAGCTTTCGAATTGGCTAACATTGCAAGGGCTTGTGTTGAAGATGAGGCTTCTTTGAGACCAAGTGCAAATGAAATTGTTGACAAGATTTCAAGATTGGTGGAGGAGTTTCCGGATGGGGAACACCACATGTTAATCACCGAAAGCTCTAGCAAGCCATTGTTGGATCAGATTTGGATCTTTCTTTCCATTGTGTAA 2007 0.4295 MKALICFFFFVFVPTSGNDLLSCETTSPDASGYSCIQNNKSSIQCATFALIHTNPYFSSLSNLTHYLGLNRFVIAKSNGFSPENTEILSNDQPLLIPIDCKCSKHGFFYAELTKTTIKGESFHGIAESLEGLTTCKAIKDRNPGVSPSNLDGEFKLLIPLRCACPVSSSQEQRALLSYPVSKGDTVSNLASKFNVTIESIISTNNLSSSEGFETQSLTPFTCLLIPLLNNNPVAKPSNNPVISPHKKTKMWRTELCIGLAGVALGLFIASLVGFFFIRLKNKKQSVKNNNKCKELDMELQHLNLSVRTTSDKKVSFEVPHEGKILEAATPRKMFLETYTREEIRNATEDFSSSNHIEGPVFHGRLNGKNIAIKRTTNDVVSKIEFGLFHHSVQRHPNILMLLGTTSLLEGPDSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWRQRLRICLDIAGALQYMHHVMIPSYVHRNIKSRNIFLDEEFGAKLGNFGMAMCAENETEDPHFYSTNPASWSLGYLAPEFVHQGVVSPSIDVFAYGVVLLEVLSGQTPISRPNDKGEGSVWLTDKIRSILASEKNASELREWVDSALGENYSFDAAFELANIARACVEDEASLRPSANEIVDKISRLVEEFPDGEHHMLITESSSKPLLDQIWIFLSIV* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3180 668 ProSiteProfiles LysM domain profile. 176 225 IPR018392 -
Amo16g3180 668 SUPERFAMILY LysM domain 177 209 IPR036779 -
Amo16g3180 668 ProSiteProfiles Protein kinase domain profile. 346 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3180 668 Pfam LysM domain 178 210 IPR018392 -
Amo16g3180 668 SMART LysM_2 113 159 IPR018392 -
Amo16g3180 668 SMART LysM_2 177 226 IPR018392 -
Amo16g3180 668 CDD LysM 177 209 IPR018392 -
Amo16g3180 668 PANTHER PROTEIN LYK2 5 660 - -
Amo16g3180 668 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 5 660 - -
Amo16g3180 668 ProSiteProfiles LysM domain profile. 112 158 IPR018392 -
Amo16g3180 668 Gene3D Transferase(Phosphotransferase) domain 1 420 650 - -
Amo16g3180 668 Gene3D Phosphorylase Kinase; domain 1 325 419 - -
Amo16g3180 668 Pfam Protein kinase domain 365 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3180 668 Gene3D LysM domain 165 235 IPR036779 -
Amo16g3180 668 SUPERFAMILY Protein kinase-like (PK-like) 334 631 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3180 Amo-Chr16 135991940 135994310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3180 32 660 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.396 8.09e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Amo16g3180 Pkinase 2.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3180 - - gmx:100816082 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3180 16 135991940 135994310 Amo16g3180 16 135991940 135994310 ECH
Amo16g3180 16 135991940 135994310 Amo06g2598 06 89366917 89369343 hybridization