Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3173 ATGAGGAATTTTCACCTCTATTTTGTGGCTCTTTCTTTGTTCATGTTCACGTTCATCTCTATCAGCCATGAGCTTCAAGAAGCTCAAACCCAAGTCTTGTTTCAGATAAGGAAGTACCTTGAGTACCCTACCTCTTTAGAGATTTGGGGAAATTACGACAATGACCTTTGTAACCTTCCTTCATCTTCCCACACAAGCATTAAGTGTGATGGCAATTCAGTAACTGAGCTCAAAATCGTTGGGGACAAACCTAATGTGAGGGTAGACAAAAACAACATCAATGGATTTGCAGTTTCTAATTTAACACTATCCCCAAATTTTTCTGTTCATTCTTTTGTCACCACATTGACAAGGTTAACAAGCTTAAGGGTCCTTAGCTTGGTGTCCTTAGGGATTTGGGGTCCACTTCCTAATAAGATTCATAGGTTATCTAATCTTCAAGTTTTGGACTTAAGCTCAAATTTCTTGTTTGGTTCTGTCCCTTCAAGAATGGCAACAATGGTTAATCTTCATACACTAGCACTTAATGGAAATTACTTTAATGACACCATACCCAATTGGTTTGACTCATTGTCTAATCTTAATGTGTTGAGTTTGAAGAACAACCAGTTAATTGGTTCATTCCCTTCCTCAATATGCAAAATTAAGTCCCTGAATGATATTTCCTTGTCCCAAAATGAGTTATCTGGTGAACTACCTGATCTAAGTGCTCTCACTTCCCTTCATGTCTTGGATTTAAGAGAGAATCATTTGGATTCTAAGTTACCATTGATGCCAAAAACAGTGGTTACAGTTCTTCTAAGCAAAAACTCATTCTCAGGTGAGATACCTAGTGAGTTTGGTGAACTGGAACGGCTTCAACATCTTGATCTTTCGTCAAATGATCTTAGTAAGACACCTCCAAATACATTGTTCTCTTTGCCAAACATAAGTTACTTGAATTTGGCGAGCAATGCACTCAGCGGTTCCCTCCCCAACAAACTAAGGTGTGGAAATAAACTTGGGTTTGTGGATATTTCTAATAACAAGCTAAATGGTGCACTTCCTTCTTGCTTGGCCGGCACGTCTGATCGACGAGTTGTTAGATACGGTGGAAACTGTTTGTCTGCTGATTCTCAGCCTCAGCAGAGAGGGTTTTATTGTAATTCAGGATTGAAGAAGTTCTCGGCATGGGAAATTGCTGTGGTGGTTGGTATCATTTTTGTAGTAGTTCCTGTGATTTTAGCTTCCGGAGTTTTACTTTATAGACAAGGTTACTTAAGGGAAACATATGAGAATGAAGTGTTCCCAAAAGTTGTCCAAGATTCCTCAACAACAGGGGTTTCCTCTGAATTCCTTGCCAGTGCCAGATTCATTTCACAGACATTGAAGCTAGGGACGCAAGCGACTTCGTTTTATAGACAATTTTCAACTGAAGAGTTGAAGGACGTCACCAAAAATTTTGACTTGTCAACTTATATTGGCGAAGGTTCCATAGGGAAGCTCTACAAAGCTAAACTGGAGAATGGATCCTATACAGTGATACGATCTGTTGCTTTGTCGAAGAAATGCTCAATTCAAAACCTCAAAATTCGGTTGGATTTACTCTCAAAACTTCAACATCCAAACTTGGTTAGCCTATTGGGTCACAGCATTGATGGTGGTGGACAAGATGACTCTAGTATTCCCAAACTCTATCTTGTATACGAGTATGTGCCAAATGGGGACTATCGCAGCCGTCTGTCAGAATTTTCACCAGAGAAGGCATTAAAGTGGTCTGATAGATTGGCAATTCTGATTGGAGTTGCCAAGGCAGTTCATCATTTACATACTAGTGTCATACCTGGTTGTTTCGGAAACAATTTAAAGACGAACAATATTTTACTTGATGAGCATGACATTCCAAAACTAAGTGACTATGGCATGTCCATCATTGCTGAAGAGATTGAAAAGACTGAGGCAAAGGAAGATAATCCAGAATTAGATGACGATGTTTATAACTTCGGATTCATACTGTTTGAATCACTTGTTGGACCTGTCGCAAGCGGAAAAGGGGAAGCATTTTTTCTTAATGAAAAGGCATCCTTTGATAGTCATGATGGTAGAAGAAAAATTGTAGATCCGACGGTGTTGACCACTTGCAATCAAGAGTCACTATCAATTGCAATATCCATCACAAGCAAATGCATATCGCCAGAATCCTCATCACGTCCTTCTTTTGAAGATGTTCTATGGAATTTACAGTATGCAGCTCAAGTCCAAGCCACAGCTGAAGCAGAACAATGA 2265 0.3947 MRNFHLYFVALSLFMFTFISISHELQEAQTQVLFQIRKYLEYPTSLEIWGNYDNDLCNLPSSSHTSIKCDGNSVTELKIVGDKPNVRVDKNNINGFAVSNLTLSPNFSVHSFVTTLTRLTSLRVLSLVSLGIWGPLPNKIHRLSNLQVLDLSSNFLFGSVPSRMATMVNLHTLALNGNYFNDTIPNWFDSLSNLNVLSLKNNQLIGSFPSSICKIKSLNDISLSQNELSGELPDLSALTSLHVLDLRENHLDSKLPLMPKTVVTVLLSKNSFSGEIPSEFGELERLQHLDLSSNDLSKTPPNTLFSLPNISYLNLASNALSGSLPNKLRCGNKLGFVDISNNKLNGALPSCLAGTSDRRVVRYGGNCLSADSQPQQRGFYCNSGLKKFSAWEIAVVVGIIFVVVPVILASGVLLYRQGYLRETYENEVFPKVVQDSSTTGVSSEFLASARFISQTLKLGTQATSFYRQFSTEELKDVTKNFDLSTYIGEGSIGKLYKAKLENGSYTVIRSVALSKKCSIQNLKIRLDLLSKLQHPNLVSLLGHSIDGGGQDDSSIPKLYLVYEYVPNGDYRSRLSEFSPEKALKWSDRLAILIGVAKAVHHLHTSVIPGCFGNNLKTNNILLDEHDIPKLSDYGMSIIAEEIEKTEAKEDNPELDDDVYNFGFILFESLVGPVASGKGEAFFLNEKASFDSHDGRRKIVDPTVLTTCNQESLSIAISITSKCISPESSSRPSFEDVLWNLQYAAQVQATAEAEQ* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3173 754 Pfam Leucine rich repeat 169 228 IPR001611 GO:0005515
Amo16g3173 754 Pfam Leucine rich repeat 263 320 IPR001611 GO:0005515
Amo16g3173 754 PANTHER INACTIVE LRR RECEPTOR-LIKE KINASE 2 754 - -
Amo16g3173 754 SUPERFAMILY L domain-like 38 387 - -
Amo16g3173 754 SUPERFAMILY Protein kinase-like (PK-like) 462 740 IPR011009 -
Amo16g3173 754 Pfam Protein kinase domain 484 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3173 754 SMART LRR_typ_2 307 331 IPR003591 -
Amo16g3173 754 SMART LRR_typ_2 238 261 IPR003591 -
Amo16g3173 754 SMART LRR_typ_2 283 306 IPR003591 -
Amo16g3173 754 SMART LRR_typ_2 143 167 IPR003591 -
Amo16g3173 754 SMART LRR_typ_2 191 215 IPR003591 -
Amo16g3173 754 Gene3D Ribonuclease Inhibitor 26 260 IPR032675 -
Amo16g3173 754 Gene3D Ribonuclease Inhibitor 261 387 IPR032675 -
Amo16g3173 754 ProSiteProfiles Leucine-rich repeat profile. 285 306 IPR001611 GO:0005515
Amo16g3173 754 PANTHER OS07G0166700 PROTEIN 2 754 IPR045272 GO:0004714|GO:0006468
Amo16g3173 754 Gene3D Transferase(Phosphotransferase) domain 1 565 754 - -
Amo16g3173 754 ProSiteProfiles Protein kinase domain profile. 481 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3173 754 Pfam Leucine Rich Repeat 145 160 IPR001611 GO:0005515
Amo16g3173 754 Gene3D Phosphorylase Kinase; domain 1 443 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3173 Amo-Chr16 135896475 135900616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3173 18 688 Miscellaneous Gene Families AT5G14210 56.168 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Amo16g3173 Pkinase 1.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3173 - - gmx:100813412 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3173 16 135896475 135900616 Amo16g3173 16 135896475 135900616 ECH