Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3171 ATGACGGTGTTTTCCGGCAGCAGACAAGTGTTTCCGATTGACTTCGAGGCGGAGGTCTCGCAGCGCCTTCTAGAAGCTTCTAACTCCGGCGATCTGACCTCCGCGCTCTACTGCATCGCTGATCCCTCCGTCGACGTCAACTTTGCCGGCGCCGTCACGCTCAGGACTCGCCACGCGGACCTCGTCCCTTTGCCGGAATCCGCTAGCCAGGTCCGCGTTGAGTTCCACGACTTCGTCACCGACGTCACGCCGCTCTTCCTCGCCGTACACTCAGGGAACGCCACACTCGTCAGGAAGTTACTGGGTAAGGGAGCTGATGTAAACCAGAAGCTCTTCAGGGGCTTTGCAACGACTGCAGCAGTAAAGGAAGGCCATATTAGTATCCTTGAGATGTTACTGAAAGCAGGGGCATCACAACCAGCATGTGAAGAAGCTCTTGTTGAGGCAAGCTGCCATGGGCAAGCAGGGTATGCTGAGTTACTCATGAGCACTGATTTGATCAGACCGCACGTTGCTGTTCATGCTCTTGTGACCGCATGCTGTAGAGGATTCGTTGATGTGATTAGGATGCTTATAAAGCGCGGTGTGGATGTCAATGCAACAGACCGGGTGCTTTTGCAGTCACTTAAGCCTTCTCTTCATGCAAATGTGGACTGTACTGCGCTTGTCGCAGCTGTAATTCACAGGCAGCTCCCTGTTGTGGATTTGCTACTGAAGAATGGTGCTAGGATAGACTCTGAGGTGAGGCTTGGAGCATGGTCATGGGACATTTCAACTGGTGAAGAGCTTCGTGTCGGTGCTGGTCTGGGAGAACCATATGACATTGCCTGGTGTGCAGTTGAGTATTTTGAAAGGAGTGGTGCCATATTGCGGTTGATCCTACAACATATCTCCTCCAAGAATCCTCACCATGGAAGAACCCTTCTGCACCATGCCGTCCTTTGCGGCAATGATGAAGCCGTCAGAGCACTCTTAGAATTCGGTGATAGCGTGGAATCTCCAGTCAAAACAACCAACAAGGCTGAGTTCCTTCCTTTACACATGGCATCCCGACTTGGCTTTCCAACAATCATTCAATGCCTTATTGATTTTGGTTGTGATTTGAACTCAATAACAGACTCAGGTGACACAGCTTTGATGATCTGTGCAAAATATAAACAAGAGGAGTGTCTCAAAGTACTAACAAGGGCAGGTGCTGATTTTGGTTTGGTGAATGTTTCTGGTCAATCTGCATGTTCAATTGCAGAGGCAAACAAGTGGTCACATGGTTTTCAACAGGCATTGCTAGATACAATCCGAAAAGGCAAGATACCAAAATCCGGCAATGTTTCTGTGTTTTCGCCGTTATTGTTCACAGCTCAAGCTGGGGATGCGGAAGCACTGAAAACTCTAGTTGAATCTGGAGAGTTTGATCTTGACTATCAAGATGAGAGAGGCTTCTCTGCAGTTATGGTTACTGCTCTAAATGGCCATGCTGAATCATTTCGGTTGCTTGTATATGCTGGTGCTGATGTGAAGTTATGCAATAAATATGGTGAAACAGCAATAACTCTATCTAAACTGAATCAGAACTGTGATCTATTTGAACAGGTCATGCTTGAATTTGCAATTGAAAAGGGCAATCGCAATGCCTGTGGCTTCTACGCTTTACATTGTGCAGCTCGTCGTGGCGACTTGGATGCTGTCAAATTGCTCACAAACAAAGGCTATGATGTGAATGTCCCTGATGGGGAGGACTACACTCCTCTTATGTTAGCAGCAAGGGAAGGCCATGCATCCATTTGCAAACTTCTGATTTCGTGCGGTGCTCATTGCAATGCTAAGAATTCTAGAGGGGAAACTCCACTTCTATTTGCAAGGAAATCTTCAGGAGGGTGTAAAAATGAAGCACAGGCCGTTATTCTAGACGAATTAGCGCGAAAACTGGTGCTACATGGCTCCTATGTATTGAAGCACACAAAATGCGGGAAGGGCTCCCCACATGGGAAACAAATAAGGATGTTAGGATCTGCAGGTGTTCTTTGTTGGGGGAAATCAAGCAGCAGAAACGTGATCTGCCGTGAGGCAGAGTTAGGGGCAAGTTCGACATTACGTAGAAACAGGTACAAGAAAGGTGATGCAGATGAACCTGGAATGTTTAGAGTGCTCACGAACAAGAACAAGGAAGTGCATTTTGTATGTGATGGGGGTTTAGAAGTTGCTGAGCTTTGGGTCAGAGGTATAAAACTTGTAACGAAAGAGGTTTATTTTGTTAAGGGATCCATCTCATAA 2271 0.472 MTVFSGSRQVFPIDFEAEVSQRLLEASNSGDLTSALYCIADPSVDVNFAGAVTLRTRHADLVPLPESASQVRVEFHDFVTDVTPLFLAVHSGNATLVRKLLGKGADVNQKLFRGFATTAAVKEGHISILEMLLKAGASQPACEEALVEASCHGQAGYAELLMSTDLIRPHVAVHALVTACCRGFVDVIRMLIKRGVDVNATDRVLLQSLKPSLHANVDCTALVAAVIHRQLPVVDLLLKNGARIDSEVRLGAWSWDISTGEELRVGAGLGEPYDIAWCAVEYFERSGAILRLILQHISSKNPHHGRTLLHHAVLCGNDEAVRALLEFGDSVESPVKTTNKAEFLPLHMASRLGFPTIIQCLIDFGCDLNSITDSGDTALMICAKYKQEECLKVLTRAGADFGLVNVSGQSACSIAEANKWSHGFQQALLDTIRKGKIPKSGNVSVFSPLLFTAQAGDAEALKTLVESGEFDLDYQDERGFSAVMVTALNGHAESFRLLVYAGADVKLCNKYGETAITLSKLNQNCDLFEQVMLEFAIEKGNRNACGFYALHCAARRGDLDAVKLLTNKGYDVNVPDGEDYTPLMLAAREGHASICKLLISCGAHCNAKNSRGETPLLFARKSSGGCKNEAQAVILDELARKLVLHGSYVLKHTKCGKGSPHGKQIRMLGSAGVLCWGKSSSRNVICREAELGASSTLRRNRYKKGDADEPGMFRVLTNKNKEVHFVCDGGLEVAELWVRGIKLVTKEVYFVKGSIS* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3171 756 Gene3D - 533 633 IPR036770 -
Amo16g3171 756 ProSiteProfiles Ankyrin repeat profile. 545 577 IPR002110 GO:0005515
Amo16g3171 756 Pfam Ankyrin repeats (3 copies) 288 370 IPR002110 GO:0005515
Amo16g3171 756 Pfam Ankyrin repeats (3 copies) 526 609 IPR002110 GO:0005515
Amo16g3171 756 Pfam Ankyrin repeats (3 copies) 85 202 IPR002110 GO:0005515
Amo16g3171 756 ProSiteProfiles Ankyrin repeat region circular profile. 80 108 - -
Amo16g3171 756 ProSiteProfiles Ankyrin repeat region circular profile. 545 576 - -
Amo16g3171 756 PANTHER ANKYRIN REPEAT-CONTAINING 6 750 - -
Amo16g3171 756 ProSiteProfiles Ankyrin repeat profile. 80 112 IPR002110 GO:0005515
Amo16g3171 756 PANTHER ANKYRIN DOMAIN PROTEIN 6 750 - -
Amo16g3171 756 SMART ANK_2a 171 200 IPR002110 GO:0005515
Amo16g3171 756 SMART ANK_2a 304 333 IPR002110 GO:0005515
Amo16g3171 756 SMART ANK_2a 478 507 IPR002110 GO:0005515
Amo16g3171 756 SMART ANK_2a 444 474 IPR002110 GO:0005515
Amo16g3171 756 SMART ANK_2a 578 607 IPR002110 GO:0005515
Amo16g3171 756 SMART ANK_2a 111 141 IPR002110 GO:0005515
Amo16g3171 756 SMART ANK_2a 341 370 IPR002110 GO:0005515
Amo16g3171 756 SMART ANK_2a 374 403 IPR002110 GO:0005515
Amo16g3171 756 SMART ANK_2a 80 109 IPR002110 GO:0005515
Amo16g3171 756 SMART ANK_2a 545 574 IPR002110 GO:0005515
Amo16g3171 756 SMART ANK_2a 217 246 IPR002110 GO:0005515
Amo16g3171 756 ProSiteProfiles Ankyrin repeat profile. 578 610 IPR002110 GO:0005515
Amo16g3171 756 Gene3D - 429 532 IPR036770 -
Amo16g3171 756 Gene3D - 289 428 IPR036770 -
Amo16g3171 756 Gene3D - 142 260 IPR036770 -
Amo16g3171 756 SUPERFAMILY Ankyrin repeat 300 620 IPR036770 -
Amo16g3171 756 ProSiteProfiles Ankyrin repeat profile. 304 336 IPR002110 GO:0005515
Amo16g3171 756 ProSiteProfiles Ankyrin repeat region circular profile. 578 609 - -
Amo16g3171 756 Gene3D - 12 141 IPR036770 -
Amo16g3171 756 ProSiteProfiles Ankyrin repeat region circular profile. 304 332 - -
Amo16g3171 756 ProSiteProfiles Ankyrin repeat profile. 341 373 IPR002110 GO:0005515
Amo16g3171 756 ProSiteProfiles Ankyrin repeat profile. 374 406 IPR002110 GO:0005515
Amo16g3171 756 ProSiteProfiles Ankyrin repeat profile. 175 203 IPR002110 GO:0005515
Amo16g3171 756 SUPERFAMILY Ankyrin repeat 61 246 IPR036770 -
Amo16g3171 756 ProSiteProfiles Ankyrin repeat profile. 478 510 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3171 Amo-Chr16 135829481 135836149 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3171 449 615 Ion Channels AT2G25600 28.743 6.83e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3171 - - adu:107494823 1251.5