Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3161 ATGGATCTTGCACAGAAGAAGCAGTTGCTAGCCATCATAGGAACAATAACACACAGCGAAGCATATTTGGCAACTGAAATTAATAACGCCACAAAAAACACCCCTATATTATCTCTATCTTCGTTTGCACCCATCACAGAGTTACCCTCTTCTCCATTGCCACAACTAATCCAACTCGGAGATGATATCAACATTCAGATGCAATGCCTTGCAGCCATTGTAGGACACTTCAAGTGGAAAAAAGTGACAACAATATATGAAGTTAATAGYRGGTTTTCTTATGATCCAGGKGTACTAATTTCCCTCTCCAATTCTCTTCGCCATGTTGGATCTGAGATCGTTAACCAGTTAGCATTKCCTTCCTTGTCTTTGCAATCTAGAATCGAAAATGAGCTTAACCAACTCAAGAAGAAGAGTAACAGGGTCTTCTTGATTGTGCACTCTTCTTTAGAGTTGGCTAGCGTGCTTTGCAAGAAAGCAAAACAAATGGGTTTGATGGAGAAAGGATATGTATGGATCATCCCGAACGAGGTTGCTGCCCTTCTTGATTCGGTTAACTCTTCAGTTATCTCTACCATGCAAGGTGTTATTGGATTCAAAACACATTTTTTGGAAAGTACCAAACCATATACAAAGTTCGGGTTCAGATTTCGAACAAGGTTTGCACTAGAGTACCCTGAAGAAGAAGAGAACAATACTCCAAGTGTTTTCGCACTTCGAGCTTATGATGCAGCTTTTGCTATTGCTAATGCTAAGGTTACAAACAAGTCACAAGGAAAGTTCAACATGAAAGAATTCCTTGATGAAAATTTACATCAATCTTCAACCTTCACCATAATTAATGTGATAGGAAAAAGCTATAGAGAAATGGCAKTTTGGTCTCCAACACATGGTTTTTCCAAGAACTTTGTTGAACATGAGAAAATGGAGGTAAATAAATTTAACGGTTATGATGGAGTTGTTTTGAGTAATATTTATTGGCCTGGAGATTTACACTCAGTTCCAAGGGGATGGACAAATAGTAATGAGGAAATGCCACTTAAAATAGGAGTACCTGCAAATGATGCTTTTGCTCAGTTTGTGAATGTCACCTATGGTGACAGCAAGCATGCAACTTCCATAACTGGTTTTTCAATCAATGTCTTCAAAGCAGCTATTAAGAATCTTCCATATCACTTGCACTATGATTTTGTTCCCTTCAATGGCTCCTATGATGAAATGGTTAATCAAGTTAACAATAAGACATTAGATGCTGCAGTTGGAGATATATCAATATTGGCATATAGATATCATTTAGTTGAGTTCTCACAACCATATGTTGACTCTGGACTTAACATGGTGGTCGTTGAGAAGCCAAATAAATCAAAACAAACATGGATGTTTATGGATGCATTCACAAAAGAGATGTGGTTGATGATGGCAGCAGTGCACGTTTTGGTTGGATTTGTCATTTGGTTGATTGAACGCGAAGAAAATGAAGAACTACAAGGTCTGGGGGCGATGCTTTGGTTTTTAGTCACCGTAATATTCCTTGCACATAGAGAACCAATAAGAAGACCATTGGCTCGAACCGTGTTGGCACCATGGTTATTTGTTATCCTAATTGTAACCAGTAGCTTCACAGCGAGTCTAACATCGATGATGACYGTATCGCAACTYGAACCATCAGTGGTTGATATTCAGACCCTTCAGAAGAGAAATGCTWCAGTTGGTTGTGATGAGAATTCATTTATTGTGAGGTATTTGATTGACATACTAAAATTCAAACCTGAGAACATTAGAAGAATAAATTCCATTAATGGTTACCCTGCAGCATTTAAGAATAATGAGATTGAAGCAGCTTTCTTTGTCGCCCCTCATGCCAAAGTCTTTCTCGCAAAGTACTCATGTGAAGGCTTCGTCCAAGCAGGGAGCACCTTTAGGCTTGGTGGCTTTGGTTTTGTGGGTTCCTAA 1953 0.3876 MDLAQKKQLLAIIGTITHSEAYLATEINNATKNTPILSLSSFAPITELPSSPLPQLIQLGDDINIQMQCLAAIVGHFKWKKVTTIYEVNSXFSYDPGVLISLSNSLRHVGSEIVNQLAXPSLSLQSRIENELNQLKKKSNRVFLIVHSSLELASVLCKKAKQMGLMEKGYVWIIPNEVAALLDSVNSSVISTMQGVIGFKTHFLESTKPYTKFGFRFRTRFALEYPEEEENNTPSVFALRAYDAAFAIANAKVTNKSQGKFNMKEFLDENLHQSSTFTIINVIGKSYREMAXWSPTHGFSKNFVEHEKMEVNKFNGYDGVVLSNIYWPGDLHSVPRGWTNSNEEMPLKIGVPANDAFAQFVNVTYGDSKHATSITGFSINVFKAAIKNLPYHLHYDFVPFNGSYDEMVNQVNNKTLDAAVGDISILAYRYHLVEFSQPYVDSGLNMVVVEKPNKSKQTWMFMDAFTKEMWLMMAAVHVLVGFVIWLIEREENEELQGLGAMLWFLVTVIFLAHREPIRRPLARTVLAPWLFVILIVTSSFTASLTSMMTVSQLEPSVVDIQTLQKRNAXVGCDENSFIVRYLIDILKFKPENIRRINSINGYPAAFKNNEIEAAFFVAPHAKVFLAKYSCEGFVQAGSTFRLGGFGFVGS* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3161 650 SUPERFAMILY Periplasmic binding protein-like II 323 648 - -
Amo16g3161 650 Pfam Bacterial extracellular solute-binding proteins, family 3 371 635 IPR001638 -
Amo16g3161 650 Pfam Ligand-gated ion channel 467 574 IPR001320 GO:0015276|GO:0016020
Amo16g3161 650 Gene3D - 459 587 - -
Amo16g3161 650 PANTHER GLUTAMATE RECEPTOR 1 647 - -
Amo16g3161 650 Gene3D - 442 451 - -
Amo16g3161 650 Gene3D - 62 233 - -
Amo16g3161 650 Gene3D - 366 441 - -
Amo16g3161 650 Gene3D - 241 349 - -
Amo16g3161 650 SMART GluR_14 348 650 IPR001320 GO:0015276|GO:0016020
Amo16g3161 650 CDD GluR_Plant 346 648 - -
Amo16g3161 650 SUPERFAMILY Periplasmic binding protein-like I 2 338 IPR028082 -
Amo16g3161 650 Pfam Receptor family ligand binding region 6 251 IPR001828 -
Amo16g3161 650 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3161 Amo-Chr16 135721147 135724222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3161 3 647 Ion Channels AT5G11210 31.863 3.77e-103 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3161 - - aip:107605043 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3161 16 135721147 135724222 Amo06g2615 06 89626064 89633020 hybridization