Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3135 ATGGGAAGACAACCTTGTTGTGAAAAGGTTGGTTTAAAGAGAGGTCCATGGACTATTGAAGAAGATCACAAGCTCATGAACTTTATCCTCAACAATGGCATCCTTTGCTGGAGAATGGTTCCCAAGCTTGCAGGTTTGCTAAGATGTGGAAAGAGCTGTAGATTGAGGTGGATTAATTATTTGAGGCCTGACCTTAAGAGAGGTGGCTTCACAGAAATGGAAGAGGATCAAATTATACAACTACATTCACGTCTTGGTAACAGGTGGTCTAAAATTGCTTCCCATTTTCCTGGGAGGACAGACAACGAGATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGCTGAAGCTCCTTGGATTAGACCCTGTGACACACAAGCAAATTGAACAGAAAGAACAAACCGATGATGATGAGGACAAAAATAACAACACCAACTTACAGACAACTATTTCACAAAAGCCTCAAGAAAATGCAGAAGAAGAAATTAAATCCATGGAGGAGGAGACGAAAAGAGAAGAAAAGAAGGTGAATTGCTGGGATGATGATAATCCTGAGATTTTGAACGATTTTGACATGATGTGTTCAAAATTCGACTTGGAATCATGGATGGTGAAACAAGAGATCAATAATAATAATACCAGCACTACTACTACTACTAGTTCACACTGCAGTTCTTCTTCTCTTTCTATTGATGATAATAACTATTCTAGTCACTTTTCTAAGGGTGAATCCAAGAATGACCATGATGATCAGGATAATCTGTTACAGCAATGGATTGAAAGTATGGATTCAATTCTCTCATGGGATGGCTTCAATGCCATTGATCAAGATTTGTTTCTTCAATAG 849 0.3863 MGRQPCCEKVGLKRGPWTIEEDHKLMNFILNNGILCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKQIEQKEQTDDDEDKNNNTNLQTTISQKPQENAEEEIKSMEEETKREEKKVNCWDDDNPEILNDFDMMCSKFDLESWMVKQEINNNNTSTTTTTSSHCSSSSLSIDDNNYSSHFSKGESKNDHDDQDNLLQQWIESMDSILSWDGFNAIDQDLFLQ* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3135 282 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo16g3135 282 MobiDBLite consensus disorder prediction 130 177 - -
Amo16g3135 282 CDD SANT 16 61 IPR001005 -
Amo16g3135 282 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo16g3135 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo16g3135 282 Gene3D - 11 67 - -
Amo16g3135 282 Gene3D - 69 116 - -
Amo16g3135 282 MobiDBLite consensus disorder prediction 157 177 - -
Amo16g3135 282 CDD SANT 70 110 IPR001005 -
Amo16g3135 282 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 255 - -
Amo16g3135 282 SMART sant 13 63 IPR001005 -
Amo16g3135 282 SMART sant 66 114 IPR001005 -
Amo16g3135 282 PANTHER MYB DOMAIN PROTEIN 40 2 255 - -
Amo16g3135 282 Coils Coil 156 183 - -
Amo16g3135 282 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo16g3135 282 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Amo16g3135 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo16g3135 282 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3135 Amo-Chr16 134631271 134634325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3135 1 168 MYB Transcription Factor Family AT1G66230 64.912 1.24e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo16g3135 Myb_DNA-binding 4.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3135 K09422 - gmx:100783231 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3135 16 134631271 134634325 Amo06g2622 06 89763820 89767130 hybridization