Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3109 ATGTGTAACAAGAATAGCCCTCCTCCTTCAGTAGAAACCCAAAAGAAAGAACCAAGTATGAGGAAAACCAGAAAACGAACAAATAAACTGTCTCCTTCTTTAACTTCTTCTTCTTCTACTACCACTGCATCTCTTAAACCACTACGTCGCAGAAACAGAACCAAAACCAGAAAGCCAAAGTACCTCAGTCTCCGCCTCATAAAAAAGAATAACAAAGATGAGAAACAGCCACAGCRGAACCTCTTCCCTCTGCATCCGCAAAACACGGTCGACGATAAAGACATGCAGGAGGAGAACAACTCCGTGGCGTTYCTCTTCAGCTCCGACGGCGGCGCCACCCTCAACGGCCTGCTGGAAGACGACAGTACCGCGACGACTTCGACGGCGATGTCGGAGGAGGGGTCGTTCTCWCCGGCGGCGGGTGTGGGCGGCGACGGAGGGTGGCTGGTTCGGAAAGCGATGAGGAGGAGGGAGGAAGAGGGGAGTGAAGAAGAGAGGTGGGTGTGTTACTCAGAAGTGGTGGAGAAGAAGGAGACGATGGAGGAAGTAACGAGTTATTGCGGAACGACGTCGTTTGGGTTGTTGTCATTGAAGCTGGATCATGAGGGGATATTGAATGCTTGGTCTGATAAGGGCTCCCTTTACATTGCAGGGGAGGCCCCACAGACTGTCCCTGATTTCCACAATSATGCTCTCTTCTATAATGCTCTTCTTCCCAATAATATTGGAGGTGATGGGTGTGGGAGTAATGATGGCATTGGGAACACATGGGTTGTACCGGAAATTGGTGGAGAGAACAGGACGASAACGGAAGAAWTGGGGTTGAAGGTGGGYCAGAGAGAGGCAAGCGTGCAGAGATACAAAGAGAAGAGACAGAACAGGCTCTTCTCTAAGAGGATCCGTTATGAAGTCCGCAAGCTCAATGCTGAGAAGCGGCCTCGGATGAAGACACTCGTAGCTTATGGGTGTTAG 972 0.501 MCNKNSPPPSVETQKKEPSMRKTRKRTNKLSPSLTSSSSTTTASLKPLRRRNRTKTRKPKYLSLRLIKKNNKDEKQPQXNLFPLHPQNTVDDKDMQEENNSVAFLFSSDGGATLNGLLEDDSTATTSTAMSEEGSFSPAAGVGGDGGWLVRKAMRRREEEGSEEERWVCYSEVVEKKETMEEVTSYCGTTSFGLLSLKLDHEGILNAWSDKGSLYIAGEAPQTVPDFHNXALFYNALLPNNIGGDGCGSNDGIGNTWVVPEIGGENRTXTEEXGLKVGQREASVQRYKEKRQNRLFSKRIRYEVRKLNAEKRPRMKTLVAYGC* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3109 323 MobiDBLite consensus disorder prediction 29 47 - -
Amo16g3109 323 Pfam CCT motif 280 316 IPR010402 GO:0005515
Amo16g3109 323 MobiDBLite consensus disorder prediction 48 65 - -
Amo16g3109 323 ProSiteProfiles CCT domain profile. 280 322 IPR010402 GO:0005515
Amo16g3109 323 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 42 317 - -
Amo16g3109 323 MobiDBLite consensus disorder prediction 1 92 - -
Amo16g3109 323 PANTHER CCT MOTIF FAMILY PROTEIN 42 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3109 Amo-Chr16 133930605 133932778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3109 195 316 C2C2-CO-like Transcription Factor Family AT1G73870 40.984 7.60e-19 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo16g3109 CCT 5.9e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3109 - - adu:107494886 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3109 16 133930605 133932778 Amo16g3109 16 133930605 133932778 ECH