Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3076 ATGGACAGTGTATTAGAGAATAATTATATTTTTGAGATAGATTGCTTACAGACAATCAAGGGTCTTGGTGGAAGAGAGAGGCGATCGCAAAGTGGTACATTTCCATCAAATCTTTTGGATAAATATGATGACCATGGTTCAGATGGTGCACCAGAATACTGTATCGATGCTGGACCTACTGGAAATATTGCCAGGTTTATAAACCACTGTTGTGAGCCTAATTTGTTTGTTCAATGTGTCTTGAGCACCCACCATAACTTGAAATTTGCAAGGGTAGTGCTGTTTGCTGCTGACAACATACCCCCACTGCAGGAGCTGACGTATGACTATGGTTATGAGCTTGATAGTGTATTGGGTCCCGATGGAAAGGTCAAACAAGTGACATGCTATTGTGGAGCTCCAGGTTGCAGGAAGCGATTATTCTAA 426 0.4178 MDSVLENNYIFEIDCLQTIKGLGGRERRSQSGTFPSNLLDKYDDHGSDGAPEYCIDAGPTGNIARFINHCCEPNLFVQCVLSTHHNLKFARVVLFAADNIPPLQELTYDYGYELDSVLGPDGKVKQVTCYCGAPGCRKRLF* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3076 141 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 1 140 - -
Amo16g3076 141 Gene3D SET domain 2 141 IPR046341 -
Amo16g3076 141 ProSiteProfiles Post-SET domain profile. 125 141 IPR003616 -
Amo16g3076 141 SMART PostSET_3 125 141 IPR003616 -
Amo16g3076 141 Pfam SET domain 48 111 IPR001214 GO:0005515
Amo16g3076 141 ProSiteProfiles SET domain profile. 6 111 IPR001214 GO:0005515
Amo16g3076 141 SUPERFAMILY SET domain 6 138 IPR046341 -
Amo16g3076 141 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 140 - -
Amo16g3076 141 SMART set_7 1 117 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3076 Amo-Chr16 133240526 133241877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3076 1 141 EF-hand Containing Proteins AT5G13960 65.734 1.69e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo16g3076 SET 5.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3076 - K11420 aprc:113863063 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3076 16 133240526 133241877 Amo16g3076 16 133240526 133241877 ECH