Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3061 ATGTCAAGTTCTCTTGCAGCAATATTAGGAGGAGCTGCAGGAGCCGTGGCATTGGCAGGGATTGTTATAATACTCATATGGTTTTGTATTTTTCGCAAGAGAAGCGTTTCGAGAACTTCAGAGACAGGATCCTCTGATCCTTCCCAAGTAGGACGACATGGCACAATTGAGTTGTCGATACGAGATACTAGGCGTTTTGAGATGGAGGAACTATCTGGGGCTACAAAGAGTTTCAGTGACAAGAATTTGATTGGAGAAGGGAAATTCGGGGAGGTTTATAAGGGTTTGCTTCAAGATGGTATGATTGTAGCAATCAAGAAGAGGCGTGGACTCGCGAGTCAGGAGTTTGTTGATGAGGTACGCTATCTCTCATCGATTCACCATCGGAATCTCGTAACTCTTTTAGGCTACTGCCAGGAAAACAACCTGCAGTTTCTTATATACGAATATGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGTGCCAATCAACAATCGCGAGAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCCTTGAGCCCCCGTTTGGTGCACAAGGATTTCAAAACAGCGAATGTACTTGTCGACGAAAACTTCATTGCTAAGGTTGCCGATGCAGGACTTCGTAATTTTTTGGGGAGAGTTGAGATTGCAGGACCATCCTCTCTAGTAGCCGCAGATGAGATATTTCTTGCACCCGAGGTGAGAGAATTCAGACGATTTTCGGAAAAGAGCGATGTATACAGCTTTGGAGTATTTTTGCTGGAATTGTTGAGTGGGAAGGAAGCAACAGAATCAGCATCTCTGGACTCTAGCTACAATCTAGTTGAATGGGTGCAAAATAATGAAGACCATGGCATGATGTCTAACATAATTGATCAAAGATTGGGAAGCACTTTCACTGCTGAAGGAATGGAAGAATTCATAATGCTGATGACAAGGTGTTTAGAATCTTCAAGTGAGAGAAGACCAGSCATGAGTTATGTGGTGATGGAACTTGARAGAATACTTGAGAAAGAAGTGAACTTGACAACAATCATGGGTGAAGCCACCCCAACAGTTACCCTTGGAAGCCAATTATTCAGACCAACAACAACATAA 1143 0.4313 MSSSLAAILGGAAGAVALAGIVIILIWFCIFRKRSVSRTSETGSSDPSQVGRHGTIELSIRDTRRFEMEELSGATKSFSDKNLIGEGKFGEVYKGLLQDGMIVAIKKRRGLASQEFVDEVRYLSSIHHRNLVTLLGYCQENNLQFLIYEYVPNGSVSSHLYGANQQSREKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKDFKTANVLVDENFIAKVADAGLRNFLGRVEIAGPSSLVAADEIFLAPEVREFRRFSEKSDVYSFGVFLLELLSGKEATESASLDSSYNLVEWVQNNEDHGMMSNIIDQRLGSTFTAEGMEEFIMLMTRCLESSSERRPXMSYVVMELERILEKEVNLTTIMGEATPTVTLGSQLFRPTTT* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3061 380 Gene3D Transferase(Phosphotransferase) domain 1 151 365 - -
Amo16g3061 380 Pfam Protein tyrosine and serine/threonine kinase 82 347 IPR001245 GO:0004672|GO:0006468
Amo16g3061 380 Gene3D Phosphorylase Kinase; domain 1 41 150 - -
Amo16g3061 380 SUPERFAMILY Protein kinase-like (PK-like) 57 347 IPR011009 -
Amo16g3061 380 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 378 - -
Amo16g3061 380 ProSiteProfiles Protein kinase domain profile. 78 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g3061 380 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 378 - -
Amo16g3061 380 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Amo16g3061 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3061 Amo-Chr16 132804050 132807395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3061 4 373 Receptor kinase-like Gene Family AT3G46290 36.203 1.54e-64 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Amo16g3061 PK_Tyr_Ser-Thr 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3061 - - gmx:100305436 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3061 16 132804050 132807395 Amo16g3061 16 132804050 132807395 ECH
Amo16g3061 16 132804050 132807395 Amo06g2447 06 86314391 86319357 hybridization