Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3049 ATGAATACTTTTACGTCGTCATCGTCGCAGTCGCCAAGGTCAAAAAAGAAGCAAACTAAGCCGGCGGCGCAGCCGCAAGAGCAGCAGCAACACGAGACAGCATGGGGAGGAAGGTACCTCGGGGTGAGGAGGAGACCATGGGGGAGGTATGCGGCTGAGATTCGCGACCCTTCTACTAAGGAAAGGCATTGGTTAGGCACGTTTGACACTGCAGAAGAAGCTGCCCTGGCATATGACAGGGCAGCTCGCTCCATGCGTGGCTCACGTGCCCGAACCAACTTCGTCTACCCGGACACTCCTCCAGGCCTATCGGTCACCCCAATCTTGTCACCCGACCAACTCCAACCCCAAACTTATAACCACCACAACCATGTCCATGACTTGTCCTCAATCTTCACCTCTAACTCGATCTCAACTAGTCAGCAGCTCGACTCAAATCCAACTCTAGACCCAGTTACGTTGTTGGTTGGCGCCAACAACAACTGGAGCTATGATAATACCTACGGCTATAGCGGCGGCGATCACCAAAACAGTAGCAACGATGGTTACTACAACAGTACTAGCTATCCCGACCAAGGTTGTCCGAATTTGGGGCACGTTTTTGTTGAAGAGGGTGGAACTAGCAATAGCAATAGCAATAGTAGTGCTTCCACAGTTGAGCTACCTCCATTGCCACCTGATATCACAAGCTCCATTGGTTATAATAATATGGATAATCATGATCATGGTTTTGATTATTATCACAATATGACTTCTGGGGATTATGTTCAAAGTCCAATGTTCAATGCAATGCCAACGGTTTCGGAGAATGTGGCTGGAGCTGAGGGTTTTGAATTGGGGGGCTCCTCTTATTTCTTCTGA 861 0.4925 MNTFTSSSSQSPRSKKKQTKPAAQPQEQQQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGLSVTPILSPDQLQPQTYNHHNHVHDLSSIFTSNSISTSQQLDSNPTLDPVTLLVGANNNWSYDNTYGYSGGDHQNSSNDGYYNSTSYPDQGCPNLGHVFVEEGGTSNSNSNSSASTVELPPLPPDITSSIGYNNMDNHDHGFDYYHNMTSGDYVQSPMFNAMPTVSENVAGAEGFELGGSSYFF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3049 286 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Amo16g3049 286 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Amo16g3049 286 MobiDBLite consensus disorder prediction 203 220 - -
Amo16g3049 286 MobiDBLite consensus disorder prediction 1 37 - -
Amo16g3049 286 MobiDBLite consensus disorder prediction 1 33 - -
Amo16g3049 286 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Amo16g3049 286 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
Amo16g3049 286 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Amo16g3049 286 MobiDBLite consensus disorder prediction 200 224 - -
Amo16g3049 286 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 4 286 - -
Amo16g3049 286 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 286 - -
Amo16g3049 286 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Amo16g3049 286 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Amo16g3049 286 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3049 Amo-Chr16 132379085 132379945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3049 26 282 AP2-EREBP Transcription Factor Family AT5G13910 43.462 4.92e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo16g3049 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3049 K09286 - gmx:100809600 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3049 16 132379085 132379945 Amo16g3049 16 132379085 132379945 ECH
Amo16g3049 16 132379085 132379945 Amo06g2422 06 85490020 85491127 hybridization
Amo16g3049 16 132379085 132379945 Amo20g3672 20 147240375 147246162 PCT
Amo20g3672 20 147240375 147246162 Amo16g3049 16 132379085 132379945 PCT