Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3044 ATGAATGATTCAACTTCAAATCAGTTGAATGAGAGCGATTTGGATTATTCTTCTGAACAAATCAAGCGGACGAGGTGTGTTGTGGATGAACAATTTATCCCAAAGGTCGGAATGACTTTCAAGACACTAGAAGAAGCTGGAAAGTTCTACAAAAATTATTCCAAACTTGCCAGTTTTTCTACCGAAATAAGGAACACGACTCGGAAGGGAGACGAGATTAAGAATCAACTAATCATATGCAGCAGAGAAGGGAGGTGGAAATCCAAGATATCTCTAACTCTGAAGACAAATCCCTCAGCCGGCATAAGCTGTCCAGCCAGGATCTACATACACATATTAAAGGACGTCAGTCTCTGGATAATTTCTAAAGTTGTTCTGAATGATTCACACCCTTGCTGTCCAGACCGGGTAGAGATGCTCAAACAACACAGGGGGCTAAGCATGTTCGTGCGTCGTACCATCAAAACTAACGAGGAAGCCAGAATCAGACCGAGCAAAACTTACCAATCATTCGTAGCAGCAGCT 525 0.4248 MNDSTSNQLNESDLDYSSEQIKRTRCVVDEQFIPKVGMTFKTLEEAGKFYKNYSKLASFSTEIRNTTRKGDEIKNQLIICSREGRWKSKISLTLKTNPSAGISCPARIYIHILKDVSLWIISKVVLNDSHPCCPDRVEMLKQHRGLSMFVRRTIKTNEEARIRPSKTYQSFVAAA 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3044 175 Pfam FAR1 DNA-binding domain 48 133 IPR004330 -
Amo16g3044 175 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 15 171 IPR031052 GO:0006355
Amo16g3044 175 PANTHER OS02G0202800 PROTEIN 15 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3044 Amo-Chr16 132114799 132115555 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g3044 FAR1 1e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3044 - - adu:107480312 284.263