Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3043 ATGATCTCCTCACTCTCGCTCTTCAGCTGCCACTTCCCATTTCCCAATTCGTCCAACTTCAAACTCATTCACAACTCAAACCTTCTAACCATTTTCATTTCCTTTTTCTTTTTTGCCTTCATCATCACCCTCCTATTCTCTTTTTCTTCTTCAGCAATGAGTTTCCAAGATATCCAAGGCGGCCCTAACGCAGCCGTGCGAAGAAGCCAGTCTCCGTCGCAGGTCATCGCCGCCGGAATCTTCCAGATCAACACTTCCGTCGCCACTTTCCGCCGCCTCGTTGATTCTCTTGGAACCGTTAAAGACACTCCCGACCACCGCCAGAAGCTGCACAACACGAGACAGAGGATATTGAAGCTGGTGAAGGATATTTCTGCTAAGCTCAAGTCGTTGAGTGAATCTGATCGCCATGCTTCTGGTGCCAATGCTAACAAGAAAATTGAAGATGCTAAGCTAGCAAGAGATTTCCAAACCACATTGCAGGAATTCCAGAAAGTGCAGCAGCTTGCATCCGAGCGCGAATCGACTTACACCCCTACTACTGCCCCTCCGCCTTCTTTTCCAACAAGCTCTGGCTCTGGTGAAGAATCCGGTGAGAGAGACCAGGAAAGCCAACCTTTTATGAGGGAGCAAAGAAGGCAAGAGGTACTTCTCTTGGATAATGAAATCTCCTTCAATGAGGCCATGATTGAAGAAAGAGAACAGGGTATTAGAGAGGTAGAAGAACAAATCGGACAAGCAAATGACATATTCAAGGACCTGGCTGTRCTTGTTCATGACCAAGGGGTTGTTATTGATGACATTCAATCGAACATCGATAATTCRMCTGSTGCAACAACCCAAGCGAGAGTTCAGTTAGCAAAAGCTTCCAAAAGTGTGAAATCTAGAACCTCATGGGTGAGTCACAAAAACCTTGACATACTAATAAGCTCTAACACAACCATGGATTTAAGCATTATCCACATAATAAGAATATAA 978 0.4499 MISSLSLFSCHFPFPNSSNFKLIHNSNLLTIFISFFFFAFIITLLFSFSSSAMSFQDIQGGPNAAVRRSQSPSQVIAAGIFQINTSVATFRRLVDSLGTVKDTPDHRQKLHNTRQRILKLVKDISAKLKSLSESDRHASGANANKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPTTAPPPSFPTSSGSGEESGERDQESQPFMREQRRQEVLLLDNEISFNEAMIEEREQGIREVEEQIGQANDIFKDLAVLVHDQGVVIDDIQSNIDNSXXATTQARVQLAKASKSVKSRTSWVSHKNLDILISSNTTMDLSIIHIIRI* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3043 325 SUPERFAMILY t-snare proteins 72 282 IPR010989 GO:0016020|GO:0016192
Amo16g3043 325 SMART tSNARE_6 222 289 IPR000727 -
Amo16g3043 325 MobiDBLite consensus disorder prediction 163 213 - -
Amo16g3043 325 SMART SynN_4 60 175 IPR006011 GO:0016020
Amo16g3043 325 Gene3D - 62 181 - -
Amo16g3043 325 MobiDBLite consensus disorder prediction 196 213 - -
Amo16g3043 325 PANTHER SYNTAXIN-22-LIKE 67 305 - -
Amo16g3043 325 Pfam Syntaxin-like protein 76 177 IPR006011 GO:0016020
Amo16g3043 325 PANTHER SYNTAXIN 67 305 IPR045242 -
Amo16g3043 325 MobiDBLite consensus disorder prediction 163 180 - -
Amo16g3043 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Amo16g3043 325 Gene3D - 228 291 - -
Amo16g3043 325 CDD SNARE_Qa 230 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3043 Amo-Chr16 132111444 132113481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3043 53 299 SNARE and Associated Proteins AT5G46860 57.769 1.55e-93 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3043 - K08488 aip:107604899 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3043 16 132111444 132113481 Amo16g3043 16 132111444 132113481 ECH
Amo16g3043 16 132111444 132113481 Amo06g2411 06 85057491 85060212 hybridization