Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3042 ATGGTTCAGTTTGCGATTGGGAAGGCGTGTGAAGAGGAAAAATGGATGGCGGAGATTCGCGATCCAAGAAAAGGTGTTCGCGTTTGGCTTGGAACGTTCAACACCACCAAAGAAGCCGCCAGAGCCTATGACAGAGAATGTCGTAAGATTCACGGAAAGAAAGTTAAAGTGAACTTTCCCAACAAGGATGACAAACACTCCATTCAACAATCTCGCAACATTATTCTAAACCTTCCTCCTCTTCCCATTTGA 252 0.4484 MVQFAIGKACEEEKWMAEIRDPRKGVRVWLGTFNTTKEAARAYDRECRKIHGKKVKVNFPNKDDKHSIQQSRNIILNLPPLPI* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3042 83 ProSiteProfiles AP2/ERF domain profile. 1 60 IPR001471 GO:0003700|GO:0006355
Amo16g3042 83 PANTHER DNA-BINDING DOMAIN 14 74 IPR044808 GO:0003700|GO:0009873
Amo16g3042 83 SUPERFAMILY DNA-binding domain 12 61 IPR016177 GO:0003677
Amo16g3042 83 SMART rav1_2 14 66 IPR001471 GO:0003700|GO:0006355
Amo16g3042 83 Gene3D AP2/ERF domain 8 62 IPR036955 GO:0003700|GO:0006355
Amo16g3042 83 CDD AP2 14 61 IPR001471 GO:0003700|GO:0006355
Amo16g3042 83 PANTHER EREBP TRANSCRIPTION FACTOR 14 74 - -
Amo16g3042 83 Pfam AP2 domain 13 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3042 Amo-Chr16 132110107 132110358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3042 14 62 AP2-EREBP Transcription Factor Family AT1G72360 71.429 1.34e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo16g3042 AP2 4.5e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3042 K09286 - gmx:100819416 108.227