Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3034 ATGGATGATTCAACCTCAGATTGTCAGCTGAATCAGGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGCCTCTCTCTGTTGTTGATGACCAGTTTGTTCTGAAGGTTAGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGTCAAGGCTGCAGGTTTTTCTACAAGAGTTCAGAGCACAAATAGAAAGGAAAACGAGATTAAGAATCAATTGATTACATGTAGCAGWGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACAAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTTGGTACTTGGATCATTTTAAAGGTTGTGCTGGATCATTCACACCTTTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCTGATCTCTATGAAGACCGTCATATATGGGTTCCAATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATTACCCGGAACAGCTCGCTTATTCAATTCGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATTAGATGCTGCAGATTTTTATACGGTCATACCGTGTGCAACTAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCACAATTCAGAGGAAAGGCGAATTGCATCACTAGATTAACAAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTAGCAGCCGAGGTAAAATGCCAATGCTTATTATTCAAGTCGAGAGGGATAATGTGCCGTCACGCACTAAGCGTGTTAAGCTTTGAACGAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCGGAGGAGCTGACTGCAATTCTGCACCGTACGTACGATAATGTCATGGTTGAGATGGAATCATTGAAAGCCAAAAGGAAGGGCACATCTTCTTTATCTCACGAAGATGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCTCCAAGGATTCGAACAAGAGGACGTCCCAAAAATAGGCTAGGTTCAAAGTTGGACAAAGAGATTGCAAATGCCTCAAAGAAGAAGAAAACGAAAGCTTTAAACGAGATAAACCTGTTTGATGCTGCATCAGTGGTGCATTCAAATTCCAGCCAATATCAAGGACATGTTATGAATTATCAGTTCAGGGTACCAGCAGCAGTGGATAATTCTTTGGGTGTATAG 1542 0.4228 MDDSTSDCQLNQGEVDYEFESNEVPEPLSVVDDQFVLKVRMTFTTLEDAGKFYRNYVKAAGFSTRVQSTNRKENEIKNQLITCSXEGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGTWIILKVVLDHSHLCCPSKAEMLKQHRELSMSIRRTIENNEEADLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKFITRNSSLIQFVKQYDNCLGSREQAERELDAADFYTVIPCATKSSIEAQFQDVYTHQKFREVQAQFRGKANCITRLTNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAEVKCQCLLFKSRGIMCRHALSVLSFERVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLLEPRSKRFDQLVFRSQNICEFASESEELTAILHRTYDNVMVEMESLKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKEIANASKKKKTKALNEINLFDAASVVHSNSSQYQGHVMNYQFRVPAAVDNSLGV* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3034 513 ProSiteProfiles Zinc finger SWIM-type profile. 300 336 IPR007527 GO:0008270
Amo16g3034 513 PANTHER OS03G0843700 PROTEIN 164 413 - -
Amo16g3034 513 PANTHER OS03G0843700 PROTEIN 26 148 - -
Amo16g3034 513 Pfam SWIM zinc finger 302 333 IPR007527 GO:0008270
Amo16g3034 513 Pfam FAR1 DNA-binding domain 51 135 IPR004330 -
Amo16g3034 513 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 164 413 IPR031052 GO:0006355
Amo16g3034 513 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 148 IPR031052 GO:0006355
Amo16g3034 513 SMART 26again6 311 338 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3034 Amo-Chr16 131908195 131912811 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g3034 FAR1 9.7e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3034 - - adu:110280503 629.402