Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2993 ATGGTTCGTGCTATAAAGGCTGCAATTGGTGATGGGGTGTTGACTTTCATGTGGGTGTTCTGTTCCTCCATGTTGGGGATAGCTTCAAGCTCCATAACAAGATTTCTTGACATTCAGCACCTCCATTACAATGGCTTCCCTTACCCTTCATTCCTTGTCACAACTTTCCTTGTTTTCGTACTTGTCTTTGTGTTCACCATCATTGGCAATGCCTTGGGTGGTGCCAGCTTCAATCCCACTGGCACTGCTGCGTTCTATGCTATTGGTCTCGGCTCTGACTCACTCTTCTCCATGGCTCTGCGCTTCCCTGCCCAGGCTCTTGGTGCTGCTGGTGGAGCTTTGGCAATTATGGAGATAATTCCTTCGAAATACAAACACATGATGGGAGGCCCTTCATTGAAAGTGGATCTGCACACCGGTGCTGTTGTTGAGGGAGTGTTGACTTTTGTGATCACTTTTGCTGTGCTCTACATAATCCTCAAGGGCCCTCGTAGTGACTTGCTCAAGACTTGGTTGCTCGCCATGTCGACCGTCGCACTAGTCATGGTTGGATCGGCTTACACCGGTCCATCCATGAATCCTGCCAATGCGTTTGGTTGGGCATACCTAAATAACTGGCACAACACATGGGATCAATTCTATGTATACTGGATCTGCCCCTTCGTCGGAGCAATATTTGCCGCATGGTTTTTCCGCGCCATCTTCCCCCCACCAGAAGCTACACAGGAGAAGAAACAGAAGAAAGCATGA 750 0.488 MVRAIKAAIGDGVLTFMWVFCSSMLGIASSSITRFLDIQHLHYNGFPYPSFLVTTFLVFVLVFVFTIIGNALGGASFNPTGTAAFYAIGLGSDSLFSMALRFPAQALGAAGGALAIMEIIPSKYKHMMGGPSLKVDLHTGAVVEGVLTFVITFAVLYIILKGPRSDLLKTWLLAMSTVALVMVGSAYTGPSMNPANAFGWAYLNNWHNTWDQFYVYWICPFVGAIFAAWFFRAIFPPPEATQEKKQKKA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2993 249 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g2993 249 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g2993 249 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g2993 249 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g2993 249 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g2993 249 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g2993 249 Pfam Major intrinsic protein 4 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g2993 249 Gene3D Glycerol uptake facilitator protein. 2 248 IPR023271 -
Amo16g2993 249 PANTHER AQUAPORIN SIP1-1 3 246 - -
Amo16g2993 249 PANTHER AQUAPORIN SIP1-1 3 246 IPR044222 GO:0015250
Amo16g2993 249 SUPERFAMILY Aquaporin-like 4 244 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2993 Amo-Chr16 130362748 130366021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2993 4 249 Major Intrinsic Protein MIP AT5G18290 55.466 1.96e-82 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2993 K09875 - gmx:100792787 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2993 16 130362748 130366021 Amo16g2993 16 130362748 130366021 ECH
Amo16g2993 16 130362748 130366021 Amo06g2282 06 80941930 80945993 hybridization
Amo16g2993 16 130362748 130366021 Amo20g3617 20 146725219 146728783 PCT
Amo20g3617 20 146725219 146728783 Amo16g2993 16 130362748 130366021 PCT