Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2985 ATGCCCCCTTCCCCTCTTGGCCTAATCTCTTTCTCCACATGGCGACAAATTCCGTCAACCATAAAATCCCCCTCACTTCTCACCTCCCCAAAAATTTCAATCCTCTCTTCTTCCCTTTTCCTACACTTTAGTTTGCTACACCAAACTTCTCTCTCCCTTCTCTTATTCTTATTATTCCTCACCAAGCCTATTAACAAATATTTTGCTGCGTTTGGTGAGAAAGAATGGTACTTCTTCAGTCCAAGAGACCGGAAGTACCCAAACGGTGCGAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCTACGGGTACCGACAAGACCATAGTGGTGTCGCCGGCGGCCACAGTTACACGTAGAGTAGGCCAAGAGAGCAGCGTTGGTGTCAAGAAGGCTCTTGTTTTCTACAAAGGAAGGCCTCCAAAGGGTGTTAAAACCAATTGGATCATGCACGAATATCGTCTTTTGGATGACTGGGTTCTGTGCCGGATTTATAAGAAGTCGAAATTCTCAGTATCTTCACCGGAGGAATCACCGTCGAGTGAAGTTCAGGCTGCAGAAGAAAATGGTTTATTCAAGAACACCATTTTGAAGAGTCCAATTCCAACACTGTCGCCGTCGCCACCGCCGCCGCTGCCGCCGCAGCCACTTCTCTCTCAAAAATCTGTGTCATTCTCAAACCTCTTAGATGCCATGGACTACTCCATGCTCAGCACCATCTTATCTGAGAACAATAACAACAGCACCCTTGATCAGGAACAATACTCCCAGATCAACACCAACCAATTGAACCATTCATCGAACATGGAGAACACTAGTAACAGCAACATGATGCTGATGAGGTCAAAGCGCCAGATAGACGAGGAAACAACAACGGTGTTGCACCCATCAAAGAAGTTCCATCACCAACTTATGGGCTCTTCTTCTTGCAGCTTCCCTAATAACATTAACAACACAAACACTGCACAATACGAGAACCCGCAATGGAACTACCTTGTCAAGCAATCCTTCTTGAACCAGCACTTACTTCTCGCTCCTCATCTTCGATTTCAAGGATAA 1062 0.4633 MPPSPLGLISFSTWRQIPSTIKSPSLLTSPKISILSSSLFLHFSLLHQTSLSLLLFLLFLTKPINKYFAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVVSPAATVTRRVGQESSVGVKKALVFYKGRPPKGVKTNWIMHEYRLLDDWVLCRIYKKSKFSVSSPEESPSSEVQAAEENGLFKNTILKSPIPTLSPSPPPPLPPQPLLSQKSVSFSNLLDAMDYSMLSTILSENNNNSTLDQEQYSQINTNQLNHSSNMENTSNSNMMLMRSKRQIDEETTTVLHPSKKFHHQLMGSSSCSFPNNINNTNTAQYENPQWNYLVKQSFLNQHLLLAPHLRFQG* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2985 353 PANTHER NAC TRANSCRIPTION FACTOR 56 157 293 - -
Amo16g2985 353 PANTHER NAC TRANSCRIPTION FACTOR 56 69 157 - -
Amo16g2985 353 PANTHER OS01G0104200 PROTEIN 157 293 - -
Amo16g2985 353 PANTHER OS01G0104200 PROTEIN 69 157 - -
Amo16g2985 353 Gene3D NAC domain 59 172 IPR036093 GO:0003677|GO:0006355
Amo16g2985 353 SUPERFAMILY NAC domain 70 168 IPR036093 GO:0003677|GO:0006355
Amo16g2985 353 Pfam No apical meristem (NAM) protein 70 156 IPR003441 GO:0003677|GO:0006355
Amo16g2985 353 ProSiteProfiles NAC domain profile. 22 179 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2985 Amo-Chr16 130008281 130009943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2985 69 353 NAC Transcription Factor Family AT3G04070 42.308 4.13e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo16g2985 NAM 6.5e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2985 16 130008281 130009943 Amo16g2985 16 130008281 130009943 ECH