Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2972 ATGAGTGCAGGGCAACCAAAGCGCCACTTGGTTACAACTGAATGGAGTATATTTGTCAGTGGAAAGAGGCTCTTTGCTAGAGACTCTGTTTTATTTATACGGCTAGCTAACAGGCAACTAGCCAACATATCATCCTCGGTATTGTCAAGTGATAGTATGCATATTGGGATTCTTGCGGCAGCTGCTCATGCTTTTGCAAATAATAGTCCCTTTACCGTCTTTTACAATCCTAGGGATAGTCCTTCAGAGTTTGTTATTCCTTTAGCCAAGTACTACAAGGTAGTGTTTCTATTCTCCTTTTTAGAGTTTGTGAGATAG 318 0.4088 MSAGQPKRHLVTTEWSIFVSGKRLFARDSVLFIRLANRQLANISSSVLSSDSMHIGILAAAAHAFANNSPFTVFYNPRDSPSEFVIPLAKYYKVVFLFSFLEFVR* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2972 105 SUPERFAMILY DNA-binding pseudobarrel domain 4 64 IPR015300 -
Amo16g2972 105 Pfam Auxin response factor 61 94 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo16g2972 105 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 96 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo16g2972 105 PANTHER AUXIN RESPONSE FACTOR 19 4 96 - -
Amo16g2972 105 Gene3D - 1 44 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2972 Amo-Chr16 129645838 129646960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2972 4 96 B3 DNA Binding Superfamily AT1G30330 67.308 2.71e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2972 - - aip:107604936 175.252