Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2928 ATGTTCCCGATGGAAATTCATTTCCAGCAACCAAATCATGAGCATAATAACAAAAGTAACAAGAAGAATCCAGGAATTGGGATCACCAAAGGAAACAAATTCAAAGGAAGAAGCAAAACCAACAACAACAACAACAACACTACAAACAAATTTGTTGGAGTGAGGCAGAGGCCTTCAGGGAGATGGGTGGCAGAGATCAAGGACACAACACAAAAGATAAGAATGTGGCTCGGAACCTTCGAGACGGCTGAAGAGGCGGCCAGAGCCTACGACGAAGCCGCCTGCCTCCTCCGCGGATCAAACACTCGAACTAACTTCATCACTCATGTCTCCACGGATTCTCCCCTGGCTTCACGCATCAGGAACCTTCTCAACGACAAAAAAGGCATCAAAAAACAAGAAAATAATGTTGTTTCTTGCGCCCCAAGAATCCTTGGTAGTACTAGCTCAAGTTCAACAAACAATGATAAAATTGAGAACTCTGTTCCACAAGTAGTGCGTGATGATGCTTATAAACCGGACTTGAGCAGCTGCGAGATGAATCCACAACAAACTAATAGTTTCTGGTCGGATTTCGGACCCATCTTCGACCGCCTTCCGTTTGCTAATCATTTACTGGACGCGTCCAAGATCGACGGGCTTATTACCGGCGGCCCAACTGACATGGAGCTTCTGGAATTTGAAAGAATGAAGGTTGAAAGACAAATTTCAGCTTCACTTTATGCCATTAATGGAGTTCACGAGTACATGGAAACTCTTCAGGAATCTAATAACGAACCTATTTGGGATCTTCCACCTTTGTGCTCCTTATTCTGCTAA 819 0.442 MFPMEIHFQQPNHEHNNKSNKKNPGIGITKGNKFKGRSKTNNNNNNTTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSTDSPLASRIRNLLNDKKGIKKQENNVVSCAPRILGSTSSSSTNNDKIENSVPQVVRDDAYKPDLSSCEMNPQQTNSFWSDFGPIFDRLPFANHLLDASKIDGLITGGPTDMELLEFERMKVERQISASLYAINGVHEYMETLQESNNEPIWDLPPLCSLFC* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2928 272 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Amo16g2928 272 MobiDBLite consensus disorder prediction 1 52 - -
Amo16g2928 272 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Amo16g2928 272 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 257 - -
Amo16g2928 272 MobiDBLite consensus disorder prediction 34 52 - -
Amo16g2928 272 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Amo16g2928 272 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Amo16g2928 272 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Amo16g2928 272 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Amo16g2928 272 CDD AP2 50 106 IPR001471 GO:0003700|GO:0006355
Amo16g2928 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 29 257 - -
Amo16g2928 272 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2928 Amo-Chr16 128331393 128332402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2928 37 272 AP2-EREBP Transcription Factor Family AT5G19790 43.825 1.27e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo16g2928 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2928 K09286 - gmx:100796898 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2928 16 128331393 128332402 Amo16g2928 16 128331393 128332402 ECH
Amo16g2928 16 128331393 128332402 Amo20g3631 20 146813675 146814545 PCT
Amo20g3631 20 146813675 146814545 Amo16g2928 16 128331393 128332402 PCT