Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2869 ATGGACAGACTCATAAAATTAGACCCATCAAACACAATCTCAATAAGAATTGAACCAAATCAAAAGTGCCATGGCCATGTCACCCTATGCAACGTCATGCACACCATGCCGGTGGCTTTCAACCTCCAACCACAAATCAAATGTCGCTACACAGTGAAGCCACATTCAGGAATCATATCTCCATTATCCACACTCACCGTGGAAATATCCTACAATCTCCCACAAGGATCCACGCTGCCGGACTCTTTCCCTCGCTCTCAAGACACTTTCCTCCTCCACAGTTGTGTCGTCCCTGGCGCAGCCATCAATGAACCTTCCTCCATGGTTGATTGTGTCCCAAGCGAGTGGTTCTCGGCGAAAAAGAAGCAAGTCTTCGTGGATACCGGCATCAAGATCGTGTTTCTTGGATCCACAATTCTGGTTAAGCTCATTGGAGATGATCATGGTTCCATGGATGACATAAGGGAAGTTCTAGAACGGAGCGATCCCTCGTGGAAAGCGGTTGATTCGATCGACTCGAACGGCGAAACGTTGCTCCATTTGGCGATTTCGCGGAAGAGACCGGATGTTGTTCAGTTGCTGCTAGAATTTGAGGCTAACTTAGAGGCGCGAGACGGTTCTGGATCAACGCCACTAGAGGCTGCAGCATCTTCAGGTGCAGCCTTAATAGCTGAGCTTCTATTAGCTCACAAGGCCAACATAGAAAGACAAGAAACTTCGACATTTGGACCCATCCACGTCGCTGCGAAACAAGGACACTGCGAAGTTTTGAGGCTCTTGTTACTCAAAGGTGCGAGAGTGGACTCGCTCACAAAAGATGGCAACACAGCGTTACACCTTGCGGTTGAAGAAAATAAAATAGAATGCGTTAAGCTCTTACTAGCAAACGGTGCCAGAACCGACATTCGCAACGCCGGCGAAGGCGACACCGTCTTACACATAGCAGCATCCACCGGGGATCATAACATGGTCGAACTCTTGCTACGAAACGGTGTGAACAAGTATGTTAGAAATGATTCATCAAAAGCTGCATATGATGTTGCAGCAGAGAAAGGACACTCTGGAATCTTCGATGCGCTGAGGCTCGGCGACGATTTGTGCATTGCTGCAAGGAAAGGAGAAGTGAGATCAATACAAAAGTTGCTTGAGAATGGTGCGTTTGTCAATGGTAGGGACCAGAATGGGTGGACTCCATTGCACAGGGCTTGTTTCAAAGGGAGGATCGACGCAGTGCACGTGCTTTTGGAGAAAGGGATTGATTTGAATGCAGAGGATGAAGAAGGGTACACTGCTTTGCACTGTGCTGTTGAATGTGGAAATGCTGATGTGGCAGAGGTTTTGGTGAAGAAAGGTGCTGATGTTGAAGCCAGGAGTAAGAAGGGTATCACTGCTTTGCAGGTGGCCAAGGCGCTTCGCTACGTTGGGATCACAAGAATTCTTGTCAATGGTGGTGCTAGTACTTTGGATCATCAAATGGTGGTGCCAGATTCCGGTGCAGTGGTTCCATTTAAGAGTAAAATTAATGCTAAGTGGAAAATGATGAAGGACGGTAGCGGTGGCTTTGCTCGTGCTTCAACTACTCCGGCTATACCTACCTATGCTTGGTTCATGAATTCAGTATTCAAATTGAAATATGATTTTTTTTTTCTTAGTAATTCGTGGAAGAAAATTGTAAATTTGTCGAACTTGTTCTTCCCAATGAGATCCAAGACTTTTTTAAGTTAA 1725 0.4638 MDRLIKLDPSNTISIRIEPNQKCHGHVTLCNVMHTMPVAFNLQPQIKCRYTVKPHSGIISPLSTLTVEISYNLPQGSTLPDSFPRSQDTFLLHSCVVPGAAINEPSSMVDCVPSEWFSAKKKQVFVDTGIKIVFLGSTILVKLIGDDHGSMDDIREVLERSDPSWKAVDSIDSNGETLLHLAISRKRPDVVQLLLEFEANLEARDGSGSTPLEAAASSGAALIAELLLAHKANIERQETSTFGPIHVAAKQGHCEVLRLLLLKGARVDSLTKDGNTALHLAVEENKIECVKLLLANGARTDIRNAGEGDTVLHIAASTGDHNMVELLLRNGVNKYVRNDSSKAAYDVAAEKGHSGIFDALRLGDDLCIAARKGEVRSIQKLLENGAFVNGRDQNGWTPLHRACFKGRIDAVHVLLEKGIDLNAEDEEGYTALHCAVECGNADVAEVLVKKGADVEARSKKGITALQVAKALRYVGITRILVNGGASTLDHQMVVPDSGAVVPFKSKINAKWKMMKDGSGGFARASTTPAIPTYAWFMNSVFKLKYDFFFLSNSWKKIVNLSNLFFPMRSKTFLS* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2869 574 Gene3D - 147 248 IPR036770 -
Amo16g2869 574 PRINTS Ankyrin repeat signature 395 410 IPR002110 GO:0005515
Amo16g2869 574 PRINTS Ankyrin repeat signature 443 457 IPR002110 GO:0005515
Amo16g2869 574 ProSiteProfiles Ankyrin repeat region circular profile. 394 426 - -
Amo16g2869 574 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Amo16g2869 574 ProSiteProfiles Ankyrin repeat profile. 207 239 IPR002110 GO:0005515
Amo16g2869 574 ProSiteProfiles Ankyrin repeat region circular profile. 427 459 - -
Amo16g2869 574 ProSiteProfiles Ankyrin repeat profile. 394 426 IPR002110 GO:0005515
Amo16g2869 574 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 515 - -
Amo16g2869 574 SMART ANK_2a 361 390 IPR002110 GO:0005515
Amo16g2869 574 SMART ANK_2a 207 236 IPR002110 GO:0005515
Amo16g2869 574 SMART ANK_2a 427 456 IPR002110 GO:0005515
Amo16g2869 574 SMART ANK_2a 460 490 IPR002110 GO:0005515
Amo16g2869 574 SMART ANK_2a 240 269 IPR002110 GO:0005515
Amo16g2869 574 SMART ANK_2a 394 423 IPR002110 GO:0005515
Amo16g2869 574 SMART ANK_2a 174 203 IPR002110 GO:0005515
Amo16g2869 574 SMART ANK_2a 273 302 IPR002110 GO:0005515
Amo16g2869 574 SMART ANK_2a 307 336 IPR002110 GO:0005515
Amo16g2869 574 Gene3D Immunoglobulins 1 135 IPR013783 -
Amo16g2869 574 ProSiteProfiles Ankyrin repeat profile. 427 459 IPR002110 GO:0005515
Amo16g2869 574 Pfam MSP (Major sperm protein) domain 5 110 IPR000535 -
Amo16g2869 574 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 515 - -
Amo16g2869 574 ProSiteProfiles Ankyrin repeat profile. 307 339 IPR002110 GO:0005515
Amo16g2869 574 ProSiteProfiles Ankyrin repeat region circular profile. 240 268 - -
Amo16g2869 574 ProSiteProfiles Ankyrin repeat region circular profile. 174 205 - -
Amo16g2869 574 ProSiteProfiles Ankyrin repeat region circular profile. 207 235 - -
Amo16g2869 574 Pfam Ankyrin repeats (many copies) 306 348 IPR002110 GO:0005515
Amo16g2869 574 ProSiteProfiles Ankyrin repeat profile. 174 206 IPR002110 GO:0005515
Amo16g2869 574 Gene3D - 365 498 IPR036770 -
Amo16g2869 574 ProSiteProfiles Ankyrin repeat region circular profile. 307 333 - -
Amo16g2869 574 SUPERFAMILY PapD-like 2 138 IPR008962 -
Amo16g2869 574 Pfam Ankyrin repeats (3 copies) 366 457 IPR002110 GO:0005515
Amo16g2869 574 Pfam Ankyrin repeats (3 copies) 162 237 IPR002110 GO:0005515
Amo16g2869 574 Pfam Ankyrin repeats (3 copies) 244 303 IPR002110 GO:0005515
Amo16g2869 574 Gene3D - 249 362 IPR036770 -
Amo16g2869 574 SUPERFAMILY Ankyrin repeat 168 487 IPR036770 -
Amo16g2869 574 ProSiteProfiles Ankyrin repeat profile. 240 272 IPR002110 GO:0005515
Amo16g2869 574 ProSiteProfiles Ankyrin repeat profile. 273 305 IPR002110 GO:0005515
Amo16g2869 574 ProSiteProfiles Ankyrin repeat region circular profile. 273 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2869 Amo-Chr16 126572177 126574953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2869 308 481 Miscellaneous Gene Families AT2G31820 34.171 1.22e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2869 - - ahf:112754810 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2869 16 126572177 126574953 Amo16g2869 16 126572177 126574953 ECH
Amo16g2869 16 126572177 126574953 Amo06g2169 06 78019319 78025100 hybridization
Amo16g2869 16 126572177 126574953 Amo10g3068 10 96418172 96430177 PCT
Amo10g3068 10 96418172 96430177 Amo16g2869 16 126572177 126574953 PCT