Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2814 ATGGAGCAACTTCTTGAGAAGATAATGTCTATGCAGTCAAGGAGTGACAGCGTTAACACTTCTCTTTTTGACAAAAGGGAGCACATAGAGAAGCTGCATCGTACTTGCAATCTTCTCCGTAAAGTTCAGAAAGAAGATAATTTGCTTGGAAATCTAGTCCCTCCGATGGGGTTATTTCCCAACTGTCTTGTGCAACAACAAGTTCTTTATCCATTCTGGAAGCAGGTTGGTGGAACTATTTTGTCTGCAAAACTTGCAAAAGAGAGAGGATGGGCCATTAACGTAGGAGGAGGATTTCATCACTACTCTGCAGAAAAAGGAGATGGATTTTGTGCTTATGCAGATATTTCTCTTTGCATCCACTTTGCTTTGGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAATGGCCATGAAACAGACTTTGCCTATGATAGTATGGCCACCAAAATAACTCCTTATGTTGCCCTAAATGAATCATTGGTTGACCTATTGGGTAATTTTGGAGATTTTAAAAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACCAGGTGCTATTTGATCAGGGTACTTATGACAAGCTCCTCTCTGAAGCTCCCAAATTCAAGCTCATCACTCCTTCTATTCTCTCTGATCGTTTGAGGTTAGTAATGCCTATAGGCTATATGTACCTGCTTGTCCCTACCCTATTTGGGGCTAATCCTAAAAAGCTTTTTGTGTGCAAACAAACCCATCTACCATATGCTTATGTTGCCCAAGAGAGTGGACAGCAAATGGGCCCATAG 813 0.4133 MEQLLEKIMSMQSRSDSVNTSLFDKREHIEKLHRTCNLLRKVQKEDNLLGNLVPPMGLFPNCLVQQQVLYPFWKQVGGTILSAKLAKERGWAINVGGGFHHYSAEKGDGFCAYADISLCIHFALVRLNISRVMIIDLDAHQGNGHETDFAYDSMATKITPYVALNESLVDLLGNFGDFKKWSKGKQKEKVNNQVLFDQGTYDKLLSEAPKFKLITPSILSDRLRLVMPIGYMYLLVPTLFGANPKKLFVCKQTHLPYAYVAQESGQQMGP* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2814 270 PRINTS Histone deacetylase superfamily signature 97 120 IPR000286 -
Amo16g2814 270 PRINTS Histone deacetylase superfamily signature 131 146 IPR000286 -
Amo16g2814 270 PANTHER - 53 153 - -
Amo16g2814 270 Pfam S25 ribosomal protein 179 228 IPR004977 -
Amo16g2814 270 Gene3D Histone deacetylase domain 5 162 IPR037138 -
Amo16g2814 270 PANTHER HISTONE DEACETYLASE 11 53 153 - -
Amo16g2814 270 Gene3D - 176 229 - -
Amo16g2814 270 Pfam Histone deacetylase domain 22 153 IPR023801 -
Amo16g2814 270 SUPERFAMILY Arginase/deacetylase 28 153 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2814 Amo-Chr16 124537285 124540020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2814 185 225 Cytoplasmic Ribosomal Protein Gene Family AT2G21580 90.244 1.17e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2814 K11418 - ahf:112775665 290.426