Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2812 ATGAAACGGTCTCTGAGGATTAGGATGGAAATCTGTGGAGTTTCAGAGAGCTCCGATTTCCTTGTGTCTGCGAAATGGAGCTGTACGGGCGATCTAGAGAATGTGGGGTATTGTGAAGTGTGTGTGATCCTGATTTTGAAAAATACAGAGGCTGTGTGGCAAATAAGATTGGGTGCTACAGAGGAATTTTATCCCCAAAGACCTGGTGAGGCTGATTGTATCTACTATTTGAGGACTAGATTCTGTGGCTATGGTTCCCACTGCCGTTTCAACCATCTCCGTGACCGGGTCGAGATCCGGTTTCATTGTGTCCGCCCAATGGATCGGTACAGCCGATTGAGCGAGGGTTCCCAGTCTGATCCAGCAAGTGTTGTGGCTGTTGGTGCTGTTGCTAGGGCTGGAGGATGGGAGTACCTGGAGCCAATTGGCCAGCCTTTGTGCTAG 444 0.4977 MKRSLRIRMEICGVSESSDFLVSAKWSCTGDLENVGYCEVCVILILKNTEAVWQIRLGATEEFYPQRPGEADCIYYLRTRFCGYGSHCRFNHLRDRVEIRFHCVRPMDRYSRLSEGSQSDPASVVAVGAVARAGGWEYLEPIGQPLC* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2812 147 SUPERFAMILY CCCH zinc finger 70 96 IPR036855 GO:0046872
Amo16g2812 147 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 69 93 IPR000571 GO:0046872
Amo16g2812 147 PANTHER PROTEIN PHOSPHATASE RELATED 49 105 - -
Amo16g2812 147 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN-RELATED 49 105 - -
Amo16g2812 147 ProSiteProfiles Zinc finger C3H1-type profile. 67 95 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2812 Amo-Chr16 124389669 124390651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2812 62 99 C2H2 Transcription Factor Family AT5G18550 65.789 6.47e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo16g2812 zf-CCCH 1.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2812 - - adu:110280992 123.25