Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2687 ATGACAGCGTGCCAGCTGGCATCCATAGGCCCCGTCCAGCAGCCGGCACAGCAGCCTGCTGCCGCGGCCACCTCGTCAGGGCCGGCAGTCTCCGAATACACGCAGAGAAAGATCTATGTGAGCAACGTTGGGTCCGAATTGGACCCGCAGAAGCTGATGGCGTTCTTCTCGAGGTTCGGTGAGATCGAGGAAGGGCCATTGGGGCTCGACAAGGTCACTGGGAAGCCAAAGGGGTTCTGTTTGTTCGTTTACAAGAGCGTTGATAGTGCGAAGAGGGCGTTGGAGGAGCCTCACAAGGAATTTGAGGGACACGTGTTGCATTGCCAGAAGGCCATTGATGGACCCAAGCAAGGGAGGATGCAGCTGCAGCACAACGTTCCAAGGACGCAGTTTCAGAGGAACGACAACGCAGGGTTTGGTGCTGGTGTTGGTGGTGGCGTTGGTAACAATGTGCAGGGGCATTTGATGGCGCCAGCGGCTGCCGCAGCCAACCCTTTAGGGGTGAACCAAGCAGCTGTGCAGCCGCTGAATCCGGCACTCGGGCAGGCATTGACGGCCCTGCTTACTCAGCAGGGTGCTTCGTTGGGGCTCACCAATTTGTTGGGAGGTTTGGGATCAACTGCAGGGGCTGTTAATTCAGGCGTTCCAGCGGCAGCAGCACACACGATGCAGGGTGGTTACAGTGCTCAGCAGAATATAAGCCCTGGTGTTATGAGCGCGTACGGGAGTCAGGTAGGGCTGCAGGCAGCTTACCCGAACCAGCAGGTCGGGCAGAGTGGCGGCTCTGGAAGAGCGCAACCTGGCGTGGGGCAGTATGGTGGTGTTGCTCCTTACATGGGCCACTAG 846 0.5863 MTACQLASIGPVQQPAQQPAAAATSSGPAVSEYTQRKIYVSNVGSELDPQKLMAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSVDSAKRALEEPHKEFEGHVLHCQKAIDGPKQGRMQLQHNVPRTQFQRNDNAGFGAGVGGGVGNNVQGHLMAPAAAAANPLGVNQAAVQPLNPALGQALTALLTQQGASLGLTNLLGGLGSTAGAVNSGVPAAAAHTMQGGYSAQQNISPGVMSAYGSQVGLQAAYPNQQVGQSGGSGRAQPGVGQYGGVAPYMGH* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2687 281 SMART rrm1_1 37 109 IPR000504 GO:0003723
Amo16g2687 281 Gene3D - 7 126 IPR012677 -
Amo16g2687 281 PANTHER GEO13361P1-RELATED 1 281 - -
Amo16g2687 281 CDD RRM_RBM24_RBM38_like 36 111 - -
Amo16g2687 281 SUPERFAMILY RNA-binding domain, RBD 18 126 IPR035979 GO:0003676
Amo16g2687 281 PANTHER - 1 281 - -
Amo16g2687 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Amo16g2687 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 119 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2687 Amo-Chr16 118626721 118629774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2687 29 121 C2H2 Transcription Factor Family AT2G19380 32.979 2.67e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2687 K12741 - qsu:112025393 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2687 16 118626721 118629774 Amo16g2687 16 118626721 118629774 ECH