Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo16g2687 | ATGACAGCGTGCCAGCTGGCATCCATAGGCCCCGTCCAGCAGCCGGCACAGCAGCCTGCTGCCGCGGCCACCTCGTCAGGGCCGGCAGTCTCCGAATACACGCAGAGAAAGATCTATGTGAGCAACGTTGGGTCCGAATTGGACCCGCAGAAGCTGATGGCGTTCTTCTCGAGGTTCGGTGAGATCGAGGAAGGGCCATTGGGGCTCGACAAGGTCACTGGGAAGCCAAAGGGGTTCTGTTTGTTCGTTTACAAGAGCGTTGATAGTGCGAAGAGGGCGTTGGAGGAGCCTCACAAGGAATTTGAGGGACACGTGTTGCATTGCCAGAAGGCCATTGATGGACCCAAGCAAGGGAGGATGCAGCTGCAGCACAACGTTCCAAGGACGCAGTTTCAGAGGAACGACAACGCAGGGTTTGGTGCTGGTGTTGGTGGTGGCGTTGGTAACAATGTGCAGGGGCATTTGATGGCGCCAGCGGCTGCCGCAGCCAACCCTTTAGGGGTGAACCAAGCAGCTGTGCAGCCGCTGAATCCGGCACTCGGGCAGGCATTGACGGCCCTGCTTACTCAGCAGGGTGCTTCGTTGGGGCTCACCAATTTGTTGGGAGGTTTGGGATCAACTGCAGGGGCTGTTAATTCAGGCGTTCCAGCGGCAGCAGCACACACGATGCAGGGTGGTTACAGTGCTCAGCAGAATATAAGCCCTGGTGTTATGAGCGCGTACGGGAGTCAGGTAGGGCTGCAGGCAGCTTACCCGAACCAGCAGGTCGGGCAGAGTGGCGGCTCTGGAAGAGCGCAACCTGGCGTGGGGCAGTATGGTGGTGTTGCTCCTTACATGGGCCACTAG | 846 | 0.5863 | MTACQLASIGPVQQPAQQPAAAATSSGPAVSEYTQRKIYVSNVGSELDPQKLMAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSVDSAKRALEEPHKEFEGHVLHCQKAIDGPKQGRMQLQHNVPRTQFQRNDNAGFGAGVGGGVGNNVQGHLMAPAAAAANPLGVNQAAVQPLNPALGQALTALLTQQGASLGLTNLLGGLGSTAGAVNSGVPAAAAHTMQGGYSAQQNISPGVMSAYGSQVGLQAAYPNQQVGQSGGSGRAQPGVGQYGGVAPYMGH* | 282 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo16g2687 | 281 | SMART | rrm1_1 | 37 | 109 | IPR000504 | GO:0003723 | |
Amo16g2687 | 281 | Gene3D | - | 7 | 126 | IPR012677 | - | |
Amo16g2687 | 281 | PANTHER | GEO13361P1-RELATED | 1 | 281 | - | - | |
Amo16g2687 | 281 | CDD | RRM_RBM24_RBM38_like | 36 | 111 | - | - | |
Amo16g2687 | 281 | SUPERFAMILY | RNA-binding domain, RBD | 18 | 126 | IPR035979 | GO:0003676 | |
Amo16g2687 | 281 | PANTHER | - | 1 | 281 | - | - | |
Amo16g2687 | 281 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 38 | 107 | IPR000504 | GO:0003723 | |
Amo16g2687 | 281 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 36 | 119 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo16g2687 | Amo-Chr16 | 118626721 | 118629774 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo16g2687 | 29 | 121 | C2H2 Transcription Factor Family | AT2G19380 | 32.979 | 2.67e-09 | 55.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo16g2687 | K12741 | - | qsu:112025393 | 323.168 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo16g2687 | 16 | 118626721 | 118629774 | Amo16g2687 | 16 | 118626721 | 118629774 | ECH |