Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2548 ATGATTATCGGAATTCATAGGAAATTGAGGTGGGATTTGGTAGATATGGGTAGCTTAAATGGAACACAGTTGAAATCTCAGCCAATCAACAATGCAAAGACTGGAAGCAGGCATTGGAGTGATCTGGTGGATCTTGATAATGGAGATATCATAACACTTGGAACAACATCAAAAGCAATTCATATTCCCTTTGGGATGGGTATGGCAACAGATCCAATGGCTTTGCGTCGAGGAGGCAAAAAGCTGCCTATGCAGGATGTTTGCTATTATGAATTGTCTCTGCCTGGGTTGGATCAGGATATTCCCTTTGGGATGGGTATGGCAACAGATCCAATGGCTTTGCGTCGAGGAGGCAGAAAGTTGCCTATGCAGGATGTTTGCTATTATGAATGGTCTCTGCCTGGGTTAGATCAACATATTCCATTTGGGATGGGTATGGCAACAGATCCAATGGCTTTGCGTCGAGGAGGCAAAAAGATGCCTATGCAGGATGTTTGCTATTATGAATGGTCTCTACCTGGGTTAGATCAGCATATTCCCTTTGGGATGGGTATGGCAACAGATCCAATGGCTTTGCGTCGAGGAGGCAGAAAGCTGCCTATGCAGGATGTTTGCTATTACGAATGGTCTCTGCCTAGGTTGGATCAGGTTCATATTACTAAGCAAAATTAG 672 0.442 MIIGIHRKLRWDLVDMGSLNGTQLKSQPINNAKTGSRHWSDLVDLDNGDIITLGTTSKAIHIPFGMGMATDPMALRRGGKKLPMQDVCYYELSLPGLDQDIPFGMGMATDPMALRRGGRKLPMQDVCYYEWSLPGLDQHIPFGMGMATDPMALRRGGKKMPMQDVCYYEWSLPGLDQHIPFGMGMATDPMALRRGGRKLPMQDVCYYEWSLPRLDQVHITKQN* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2548 223 PANTHER PROTEIN PHOSPHATASE 2C 145 182 IPR015655 GO:0004722|GO:0006470
Amo16g2548 223 SUPERFAMILY SMAD/FHA domain 9 62 IPR008984 GO:0005515
Amo16g2548 223 Pfam FHA domain 9 54 IPR000253 GO:0005515
Amo16g2548 223 PANTHER PROTEIN PHOSPHATASE 2C 70 184 217 - -
Amo16g2548 223 PANTHER PROTEIN PHOSPHATASE 2C 7 104 IPR015655 GO:0004722|GO:0006470
Amo16g2548 223 PANTHER PROTEIN PHOSPHATASE 2C 184 217 IPR015655 GO:0004722|GO:0006470
Amo16g2548 223 PANTHER PROTEIN PHOSPHATASE 2C 105 143 IPR015655 GO:0004722|GO:0006470
Amo16g2548 223 CDD FHA 2 62 IPR000253 GO:0005515
Amo16g2548 223 PANTHER PROTEIN PHOSPHATASE 2C 70 145 182 - -
Amo16g2548 223 PANTHER PROTEIN PHOSPHATASE 2C 70 7 104 - -
Amo16g2548 223 PANTHER PROTEIN PHOSPHATASE 2C 70 105 143 - -
Amo16g2548 223 Gene3D - 3 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2548 Amo-Chr16 109153713 109155796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2548 178 212 PP2C-type Phosphatase Gene Family AT5G19280 71.429 1.14e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2548 K01090 - tcc:18602934 141.354