Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2538 ATGTCCGCCGCCGCCGGAGCTTCTAAACTCCATGAGTCGCCGCCGACGGAAGCTTCCGGCATCCCGAACCGGCCGCCGCCGAAGCGTCATCTCGCCTTCGCTTCGACCAAGCCGCCGTTTGCTCCGCTGGACGACTACCGCAGCTTCTCCGGTCCCCACTGTCGGAAAGCCTCCGATCAAGAACAGGAAGCCGTCGTTGTTCGTTCTCCATACATGAAGCGCAAGAGTGGAGGAGTACAGGAGCAAAGTAATAGTCCTGGATATGCTAATACAGTTAATAGTCCTCTCCAAACCCCTGGATCTACAAAAGGAGGGAGAACATATAATAAGTCAAGGGCTTCTAAGGAAGGTAGATCCGTTCCACAAGCACCCATCTTAGAGGCTGGATCCCCATCTCTTACTCCTAGCAGCTGCCGCTATGACAGTTCCTTAGGTCTCTTGACAAAAAAATTTGTCAATTTGCTCAAGCATGCAGAGGGTGGCAATCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGAAGGATATATGACATAACTAACGTTCTGGAAGGAATTGGTCTTATAGAGAAGAAGATCAAGAACAGAATACATTGGAAGGGGATTGATTGTTCTACATCTGGTGGGATAGATGATGATGTCTCTATGCTGAAGGAAGATGTTGAGAAACTTTCCTTGGAGGAGCACCAATTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGATTTTAAGTGAAGATGAAAACAATAAGAAGATGCTTTTCGTGACTGAAGATGATATCAAGTCCTTACCTGAATTCCAGAATGAAACTCTCATAGCAATTAAAGCTCCACATGGAACCACACTGGAAGTCCCTGAACCTGAGGAAGCTGTTGACTACCCACAGAGGAGATATAGGGTCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTTCCTTATCAGTCAATTTGAGGAGAAATTCGAAGAGATGAGCTTTCCACTTGCTTCAAGTTCAGGGTCCAACGAACATCAAGCAGCAGAACTGCTTCCTGTTGAATGCAATGATAAAGCCCCTGAACCTCCAGCTCAACTCTCATCTAATACCTGCTCTGATCTGAACACTGTACAAGAATTTGCTGGAGGCATGATGAAAATTGTTCCTTCAGCCGCTGATACCGATGCAGATTACTGGCTTCTATCAGATGTTGAAGCTAGCATAACAGACATGTGGAAAACAGATTCTAGTGTAGATTGGGATGGTGTGGACATGCTTAATTCTGACTTTGTACTCATCTCGAGGCCACAGACTCCATCATCTGGGTTTGCCGAAGCACCATCAGCAGTAGCCAGCATCCCGCATAGGTGA 1362 0.4626 MSAAAGASKLHESPPTEASGIPNRPPPKRHLAFASTKPPFAPLDDYRSFSGPHCRKASDQEQEAVVVRSPYMKRKSGGVQEQSNSPGYANTVNSPLQTPGSTKGGRTYNKSRASKEGRSVPQAPILEAGSPSLTPSSCRYDSSLGLLTKKFVNLLKHAEGGNLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKIKNRIHWKGIDCSTSGGIDDDVSMLKEDVEKLSLEEHQLDDQIREMQERLRILSEDENNKKMLFVTEDDIKSLPEFQNETLIAIKAPHGTTLEVPEPEEAVDYPQRRYRVILRSTMGPIDVFLISQFEEKFEEMSFPLASSSGSNEHQAAELLPVECNDKAPEPPAQLSSNTCSDLNTVQEFAGGMMKIVPSAADTDADYWLLSDVEASITDMWKTDSSVDWDGVDMLNSDFVLISRPQTPSSGFAEAPSAVASIPHR* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2538 453 PANTHER TRANSCRIPTION FACTOR E2FB 25 436 - -
Amo16g2538 453 SUPERFAMILY E2F-DP heterodimerization region 216 321 IPR037241 -
Amo16g2538 453 Gene3D - 211 321 - -
Amo16g2538 453 PANTHER TRANSCRIPTION FACTOR E2F 25 436 IPR015633 GO:0000978|GO:0006357
Amo16g2538 453 SMART E2F_TDP_2 139 204 IPR003316 GO:0005667|GO:0006355
Amo16g2538 453 MobiDBLite consensus disorder prediction 1 133 - -
Amo16g2538 453 Gene3D - 134 206 IPR036388 -
Amo16g2538 453 Coils Coil 217 251 - -
Amo16g2538 453 MobiDBLite consensus disorder prediction 76 108 - -
Amo16g2538 453 CDD E2F_DD 215 321 IPR032198 GO:0046983
Amo16g2538 453 Pfam E2F transcription factor CC-MB domain 220 320 IPR032198 GO:0046983
Amo16g2538 453 Pfam E2F/DP family winged-helix DNA-binding domain 141 204 IPR003316 GO:0005667|GO:0006355
Amo16g2538 453 SUPERFAMILY "Winged helix" DNA-binding domain 139 202 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2538 Amo-Chr16 108634535 108639647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2538 22 451 E2F-DP Transcription Factor Family AT2G36010 56.716 1.39e-154 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Amo16g2538 E2F_CC-MB 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2538 K06620 - gmx:100811762 618.231