Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2510 ATGATTGGAGTGTTTCCTTCACGCTTGGTGTTCACTGCTGCCATCATCCCGCGCACCTCCCTCGTGATACTGTCGAGCGTCGGTCGTCGACTAGGAACTCTCCGTCGCCGTCGCCTGGCCGCCGGACATCCGCACGCCTGCGTGGACCTGTGTCGCACCATACTCATCTTTGAACGCCGCATATTCTTTGTGCTGTCTATGGTCTGCCGTCAAGGAATCCAACACCACCGTTCCCTCTGCCTGATCGCGACACTTCTCTTCGTCCCACTCTTGGACTACAAAAGGACTCCATACCAAACTCAGGAGAGTAAGCTTAGGAGAGGTGTTGATATTGTTGTTGGCACTCCAGGTCGCATGAAGGATCATATAGAAAGGAAAAATATTGACCTGAGCCAGCTAAAGTTCCGTGTCCTTGATGAGGCTAATGAGATGCTCAGAATGGGTTTTGTTGAAGATGTGGAACTAATTCTAGGCAAGGTACAAGATGTTAGCAAAATTCAGACACTTCTTTTCAGTGTTACTTTGCCAGACTGGGTTAAGCATGCATGTTTTGTCATCATCCTATGTTTCAGTGTTACTTTGCTAGCCATTTTTTGGTTACAAATTAAGCACACTATACAAAACAAGCTTCACCGAAATGGTATCCCTGAAGATTTGGTTGCAACAAAAGCTATACTTGCTAAAATCACAAAGAACCCAGGAGAATATAATCAAGCATTTGTGGAGCAATTCAAGATATTTCATCAAGAACTCAAGGACTTCTTTAATGCTGGCAGGTTTATCTTGAATTCTCAGTATCACTTGTAA 807 0.4498 MIGVFPSRLVFTAAIIPRTSLVILSSVGRRLGTLRRRRLAAGHPHACVDLCRTILIFERRIFFVLSMVCRQGIQHHRSLCLIATLLFVPLLDYKRTPYQTQESKLRRGVDIVVGTPGRMKDHIERKNIDLSQLKFRVLDEANEMLRMGFVEDVELILGKVQDVSKIQTLLFSVTLPDWVKHACFVIILCFSVTLLAIFWLQIKHTIQNKLHRNGIPEDLVATKAILAKITKNPGEYNQAFVEQFKIFHQELKDFFNAGRFILNSQYHL* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2510 268 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 95 182 - -
Amo16g2510 268 Gene3D - 61 188 IPR027417 -
Amo16g2510 268 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 193 IPR014001 -
Amo16g2510 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 183 IPR027417 -
Amo16g2510 268 PANTHER DEAD (ASP-GLU-ALA-ASP) BOX HELICASE 21 95 182 - -
Amo16g2510 268 Pfam DEAD/DEAH box helicase 91 180 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2510 Amo-Chr16 107305616 107308415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2510 105 176 Eukaryotic Initiation Factors Gene Family AT3G13920 43.056 3.22e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2510 K16911 - gmx:100820207 149.443