Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2463 ATGTCATCATCAGAAACACCACTACGGTGGACTCAGCAACAACAAGAAGAAGCAGAAGATAATATCACTGAAGATGAAATGAATAATAATAAGGAGTTGATGTTCGAGAAGGTTCTTACTCCAAGCGACGTTGGGAAGCTCAACCGCATCGTCATCCCAAAGCCCCACGCGGAGGCTCATTTCCCGACCGGCGCTGACGGATACTCGACCGAAGGGAAGGGCCTGCTTCTGAATTTCGAGGACCAATCGGGAAAACAATGGAGGTTCCGTTACTCCTATTGGAGCAGCAGCCAAAGCTATGTTCTCACCAAAGGATGGGGCCGCTACGTTAGGGAAAACCACCTTTCTGCCGGCGACGTCGTTTTGTTCAAGAGGCACCGCCTCCATCCCAATAATTTCTTTGTTAGTTGGAGGCGCCGTGATCCCGGGACCATGCCCCTGGCGGCTAGAGGGAGGAGGAGGAGGAGGAGAAGGGATGAGGGTACCAGTGGTGGTGATGGCAACAGTGAGAGTGTGGTGGTGGGTGATGCTGCTGTTTCTGTTTCTGTGGGGTATCCTACGCACCACCAGCAACATCCCTTCTCATCCTATCATTCCAATGAATATTTTCTTCATGCAGGTGGAGAGTGCCAAGGTGCGAACGAAACGACAATGGTGGAAAACCCTTTGAGTTCAGGTTCGAGGACGCTGAGGCTGTTCGGGGTGAACATGGAATGCCAAGAACAACGAGAGACACGTAATAATAACAATAATAATAATAATTCTGAAACCTTCGCACCCTAA 783 0.5006 MSSSETPLRWTQQQQEEAEDNITEDEMNNNKELMFEKVLTPSDVGKLNRIVIPKPHAEAHFPTGADGYSTEGKGLLLNFEDQSGKQWRFRYSYWSSSQSYVLTKGWGRYVRENHLSAGDVVLFKRHRLHPNNFFVSWRRRDPGTMPLAARGRRRRRRRDEGTSGGDGNSESVVVGDAAVSVSVGYPTHHQQHPFSSYHSNEYFLHAGGECQGANETTMVENPLSSGSRTLRLFGVNMECQEQRETRNNNNNNNNSETFAP* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2463 260 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 11 252 IPR044800 GO:0003700
Amo16g2463 260 ProSiteProfiles B3 DNA-binding domain profile. 35 141 IPR003340 GO:0003677
Amo16g2463 260 SUPERFAMILY DNA-binding pseudobarrel domain 31 139 IPR015300 -
Amo16g2463 260 MobiDBLite consensus disorder prediction 240 260 - -
Amo16g2463 260 Pfam B3 DNA binding domain 35 140 IPR003340 GO:0003677
Amo16g2463 260 CDD B3_DNA 34 139 IPR003340 GO:0003677
Amo16g2463 260 MobiDBLite consensus disorder prediction 1 22 - -
Amo16g2463 260 MobiDBLite consensus disorder prediction 145 172 - -
Amo16g2463 260 MobiDBLite consensus disorder prediction 1 17 - -
Amo16g2463 260 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 11 252 - -
Amo16g2463 260 Gene3D - 23 145 IPR015300 -
Amo16g2463 260 SMART B3_2 35 141 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2463 Amo-Chr16 104474775 104477908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2463 8 240 RAV Transcription Factor Family AT5G06250 44.000 1.92e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo16g2463 B3 2.5e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2463 - - ahf:112758698 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2463 16 104474775 104477908 Amo16g2463 16 104474775 104477908 ECH
Amo16g2463 16 104474775 104477908 Amo02g1595 02 46008160 46017774 PCT