Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2460 ATGTCCATAAAGGAGGATGATGTTAAGAATGATTCTGATAATGATTTGGGTGATGATTTCGATTATCAACCGAATGCAGAAGATGATGCTGATGACGACGATGTGGATTCGCTGGATTCCACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCAGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACGGAGGATGAGGCTTGCCAATTTTATAACGCTTATTCTTGTTGGCATAGATTTGTAATGAGGAAAGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTATCAGGCAACTTGTTTGCAACAAAGAGGGATGGAGAAATATGAGGTATCTTGATATGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTACGGCTGCGGTAGATGGAAYGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGAGGGCAGGGGCTTTGAATATAACGGTACTAAGCACAACCTTGGACAAGGTAGAGTTTAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCCTGTAGTCATATCTTCTGTGCCATGAAGTTCGAAAACATACTTAAGTTACCAGATTCGTTGATATACAAAAGGTGGACAAATAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACATCGAAAGGGTCTTAAAGTTTCGAGTTGGAGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCCTGCAAGGATCTTGCATACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCGSCTGCAGTCACGCAAACAAGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGATCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGCTGTCCAGATCTGATGCAGCATAGTGTGGAAGGTAACCCTCGCGATCGATCATACGGCAATGCATCAGCCAAGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAATTAAGTCAGAACACCACTCAGGACCTAATACCAAGCCTTTTAAAGAGGGTGGAACAAGGAAGTTTACGGCGACGGGTATGAGGAACCGGAAGGGTAAAGACAACACTTTTGTCAAGCGGAGCCTCCGTGAAAGCAGCAAATCCATTGACATCGCGTCCATGAATGGTGTTTTCAATAAAAATCTCGACTCGTTAACACATGTGAAGGAGTCACAGCAGGACAAGAGACATTCATTCACGAACTATGAATGCGATAATGATGTCATTGATGATAAATGTGACACACGACATGTGGAGATCGATGTCCGAGATCAGTTACCATCGTCACTGCCTTGTGGCAACAAACAAGGATCGTACATGGCATTGTTCGCATCGATGCATAGGACACTTTGA 1614 0.4393 MSIKEDDVKNDSDNDLGDDFDYQPNAEDDADDDDVDSLDSTSKSEEVCGVKRIADLMVEDIWNLEFRTEDEACQFYNAYSCWHRFVMRKDDVVRDNQGRIIIRQLVCNKEGWRNMRYLDMDDRSREARSLTRTKCPARLRVKLDYGCGRWNVSCFVESHNHDLTPPQFAHLRAGALNITVLSTTLDKVEFSVTALGDPAKDRRVEVDRGKNLFSCSCKLFESRGIPCSHIFCAMKFENILKLPDSLIYKRWTNNAKNEFISTEMPVNDDIERVLKFRVGALASNCNKLCDIACKDLAYFDEVQSELVNLVIRLQSRKQGKSTPNVNVEGINDPFVVKSKGAPSKRSSWRKKRSCSNCHKYGHYYKRCPDLMQHSVEGNPRDRSYGNASAKDSGFSPERFANSSRSFSIKSEHHSGPNTKPFKEGGTRKFTATGMRNRKGKDNTFVKRSLRESSKSIDIASMNGVFNKNLDSLTHVKESQQDKRHSFTNYECDNDVIDDKCDTRHVEIDVRDQLPSSLPCGNKQGSYMALFASMHRTL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2460 537 MobiDBLite consensus disorder prediction 374 427 - -
Amo16g2460 537 SMART 26again6 213 240 IPR006564 GO:0008270
Amo16g2460 537 ProSiteProfiles Zinc finger SWIM-type profile. 202 238 IPR007527 GO:0008270
Amo16g2460 537 MobiDBLite consensus disorder prediction 12 39 - -
Amo16g2460 537 MobiDBLite consensus disorder prediction 395 414 - -
Amo16g2460 537 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 171 IPR031052 GO:0006355
Amo16g2460 537 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 191 297 IPR031052 GO:0006355
Amo16g2460 537 MobiDBLite consensus disorder prediction 1 42 - -
Amo16g2460 537 Pfam FAR1 DNA-binding domain 74 164 IPR004330 -
Amo16g2460 537 PANTHER OS03G0181600 PROTEIN 57 171 - -
Amo16g2460 537 PANTHER OS03G0181600 PROTEIN 191 297 - -
Amo16g2460 537 SUPERFAMILY Retrovirus zinc finger-like domains 340 372 IPR036875 GO:0003676|GO:0008270
Amo16g2460 537 ProSiteProfiles Zinc finger CCHC-type profile. 354 369 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2460 Amo-Chr16 104287519 104290520 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g2460 FAR1 3.3e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2460 - - ahf:112755379 632.098