Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2437 ATGGAAAACATGCCACCAGGTTATCGTTTCTACCCTACGGAAGAGGAGCTGATTTCATTCTATCTACGGAACAAGCTTGAAGGAGTGAGGGAGGACATGAATCGGGTTATTCCAGTTCTTGATATATATGAATATAGTCCAAGCCAACTCCCACAAATATCGGGAGAGGCAAGTGTTAGAGACAGCGAGCAGTGGTTCTTTTTCATTCCGCGGCAAGAAAGCGAAGCGCGTGGAGGGAGGCCGAAGAGGCTCACAACAACTGGGTACTGGAAAGCCACTGGCTCCCCTAACCATGTTTTCTCTTCCGATAATCGCGTCATCGGAATGAAGAGAACCATGGTTTTCTACTGCGGTAGAGCTCCTAACGGAACTAAAACCGATTGGAAGATGAATGAGTATAAAGCCATTGACACTCATCACCCTTCTTCTTCCTCCAACAACAGGGCGGTTCCTATGTTAAGGCAAGAATTCAGTTTATGCCGAGTGTACAAGAAAGCAAAATGTTTGAGGGCATTTGATAGAAGACCACCTCCAAGGAGGGACACGTATCCTCCTAGCCAGAACAACGGTTCATCATCTTTTGATCATCATCATCAACATAATCAAACGGTGGAGAAATCTTCAGGTGCAGGTAGCTCACCGGAGAGTTCGTGCTCCGAAGACCACGGACAGTGTTCTCATCGGACGGAGGATGTGGAAAACGCTAACGAGCCATTTCTCGATTGGGAGCAAATCGATTGGTTCTTAGGATCTTCACTGCCGGAACCATGA 771 0.4708 MENMPPGYRFYPTEEELISFYLRNKLEGVREDMNRVIPVLDIYEYSPSQLPQISGEASVRDSEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVFSSDNRVIGMKRTMVFYCGRAPNGTKTDWKMNEYKAIDTHHPSSSSNNRAVPMLRQEFSLCRVYKKAKCLRAFDRRPPPRRDTYPPSQNNGSSSFDHHHQHNQTVEKSSGAGSSPESSCSEDHGQCSHRTEDVENANEPFLDWEQIDWFLGSSLPEP* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2437 256 ProSiteProfiles NAC domain profile. 4 165 IPR003441 GO:0003677|GO:0006355
Amo16g2437 256 MobiDBLite consensus disorder prediction 171 238 - -
Amo16g2437 256 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Amo16g2437 256 SUPERFAMILY NAC domain 2 165 IPR036093 GO:0003677|GO:0006355
Amo16g2437 256 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 247 - -
Amo16g2437 256 Gene3D NAC domain 13 169 IPR036093 GO:0003677|GO:0006355
Amo16g2437 256 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 247 - -
Amo16g2437 256 MobiDBLite consensus disorder prediction 204 220 - -
Amo16g2437 256 MobiDBLite consensus disorder prediction 221 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2437 Amo-Chr16 103062113 103063728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2437 7 247 NAC Transcription Factor Family AT5G22380 53.279 2.17e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo16g2437 NAM 9.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2437 - - gmx:100777948 350.903