Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2435 ATGCCACGGTATGAAAATCACGTTCACCTCGACGGCGCCTTCATTTTACAAAACACCCCATCCTTCATCGACGCCACTTCTCACAGATTCGCTCCTAAACCTTCATCATCGGCGCCTTTCGCCCCTTCACTGCCTGAATTTTGCTACCTTTTCCACGCCGTTTTCTGTCACTGCTCGCTAAAGCTCGTCAGCGTCATCGCCGCCGCTTCTACCTATTCTTCTTATCGCCGTTGTTTTAGGGTTAAAGCTTTTTCTCTCTCTAACATTCTTCTTCGGTCTCTCCAACTTCTTAAGAAAGCTATATTTGACAAAGATGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATACATTGATGATCTAAAAAATTCTGATAAGGAAGAAGCTGTGAAAATTACACAACCAAATTTAGATGCTCTTAGTGAAGACTATTCTGTTTGTTGCCAAGAAACTGCTTTTTTTTCTTTGCAAAGTTGCATGAACCATTCCTGTAGTCCTAATGCCAAATCCTTCAAGAAAGACGAGGATAGGGATGGCCAAGCAACCATAATCGCAGTAAGGCCGATTCGAAAAGGAGAAGAGGTTGGTTTCAGCATGTATGTTGACTGGAGAATGGCTTTGGTAGCTTGGGCTGTGATGCCTTGCCATTTCACAGGCGGTCTCATTCAAGCAAAGTCTGCCAAAGGCTTTTCAGATGACTATACTGCTTCCCATTTTGAGCTTGTTGCTCTTGCATCTGAGTCTTCCGCCAATATAAGGACTATAGCGTCATTTTGCCATGAAGAACATGTAATCATGAAAGCAAAGACATCTCAGGAAATTCCAATGAGAAAGTACAGGTTGATACTTGCAATTTCTGCTATTCCCTTAACAATTATATTTAAGTTGCATCTAACAGAAGCTACTACGAGCGTGGGCGTATGTAGTAACTACCTCCTTCAACTTGCAGCACCCGACCCGGATATGTCGGATCCAGTTATTAAGGCTCAGATCGCCAACCATCCCCACTATCTCGATTTGCTCTCTGCTTACTTAAATGATAAAGAGAGAGTTGCTGCTGCCTTGGAGAATCCTTTGATTTTTGCTTATTATACAAAACAAATAATGTCATCATGGGCTGGCTACAAAATATATCCGAAGAAGAATAAAAGGAGGAACAAAAATGCAAAGTTTTCTTGTGAAGAAAGCAGTGATTATGAAGAAGAAGCAGCAGAAAGAGCAAGTGAAGTAAATTTTGCAGATGAGATAAGTGGAATTAACACAGGACCTCCTTCCCCAACTTCATCTATTAATTATTAG 1305 0.4138 MPRYENHVHLDGAFILQNTPSFIDATSHRFAPKPSSSAPFAPSLPEFCYLFHAVFCHCSLKLVSVIAAASTYSSYRRCFRVKAFSLSNILLRSLQLLKKAIFDKDDLVVASPVEDYFLYIDDLKNSDKEEAVKITQPNLDALSEDYSVCCQETAFFSLQSCMNHSCSPNAKSFKKDEDRDGQATIIAVRPIRKGEEVGFSMYVDWRMALVAWAVMPCHFTGGLIQAKSAKGFSDDYTASHFELVALASESSANIRTIASFCHEEHVIMKAKTSQEIPMRKYRLILAISAIPLTIIFKLHLTEATTSVGVCSNYLLQLAAPDPDMSDPVIKAQIANHPHYLDLLSAYLNDKERVAAALENPLIFAYYTKQIMSSWAGYKIYPKKNKRRNKNAKFSCEESSDYEEEAAERASEVNFADEISGINTGPPSPTSSINY* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2435 434 Pfam KNOX1 domain 329 348 IPR005540 GO:0003677|GO:0005634
Amo16g2435 434 CDD SET_SMYD 128 204 - -
Amo16g2435 434 Gene3D ABC transporter type 1, transmembrane domain 198 291 IPR036640 GO:0005524|GO:0016021
Amo16g2435 434 Gene3D - 346 365 - -
Amo16g2435 434 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 197 296 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo16g2435 434 Pfam ABC transporter transmembrane region 198 290 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo16g2435 434 MobiDBLite consensus disorder prediction 416 434 - -
Amo16g2435 434 ProSiteProfiles SET domain profile. 77 202 IPR001214 GO:0005515
Amo16g2435 434 SUPERFAMILY SET domain 115 217 IPR046341 -
Amo16g2435 434 MobiDBLite consensus disorder prediction 391 411 - -
Amo16g2435 434 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 106 207 IPR044237 GO:0008168
Amo16g2435 434 Gene3D SET domain 92 197 IPR046341 -
Amo16g2435 434 Pfam SET domain 135 197 IPR001214 GO:0005515
Amo16g2435 434 MobiDBLite consensus disorder prediction 391 434 - -
Amo16g2435 434 SUPERFAMILY ABC transporter transmembrane region 198 295 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2435 Amo-Chr16 103029917 103034486 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo16g2435 ABC_membrane 5.1e-10 CL0241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2435 - - aip:107628408 214.157