Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2422 ATGAAATTAAAGTTTGAACTCATTTTGAAGATTATGGATGATTCAACCTCAGATTGTCAGCTGAATCAGGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGTTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTTTCTACAAGAGTTCGGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAAGTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCAAGAAGACTAATCCAACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTACTGTCCAAATCTGTATGAAGACCGTCATATATGGGTTCCTATCTATCTGGATCACCACTTCTGGGCAGGAATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCCTTTTTTACAAGTTTATCACCCGGAATAGCTCGCTTATTCAGTTCCCGGGAGCAAGCAGAGAGAAAATCAGATGCTGCAAATTTTCATACGGTCATACCGTGTGCAACGAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGAAAAGGCGAATTGCATCACCAGATTAACGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGTATACTGTGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACAAGTAAGCCAAGTGTCTCCGAGATATATACTGGAACGATGGAGCAAAAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGACAAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCGGAGGAGCTGACTACAATTCTGTACCGTGTGTACGATAACGTCATGGCTGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAAATGAAAGTTTTAAGCGAGATAAACTTGTTTGATGCTGCATCAGTGGTGCATTCAAATTCCAGCCAATATCAAGGACATGTTATGAATTATCAGTTCAGGGTACCAGGAGCAGGGGATAACTCTTTAGGTGTATAG 1443 0.4234 MKLKFELILKIMDDSTSDCQLNQGEVDYEFESNEVPEFVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRSTNRKGNEIKNQVITCSREGKWKSKISPTKKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPYCPNLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFTSLSPGIARLFSSREQAERKSDAANFHTVIPCATKSSIEAQFQDVYTHQKFREVQAQFREKANCITRLTNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLLEPRSKRFDKLVFRSQNICEFASESEELTTILYRVYDNVMAEMESLKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKMKVLSEINLFDAASVVHSNSSQYQGHVMNYQFRVPGAGDNSLGV* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2422 480 PANTHER OS03G0843700 PROTEIN 142 370 - -
Amo16g2422 480 Pfam SWIM zinc finger 269 300 IPR007527 GO:0008270
Amo16g2422 480 MobiDBLite consensus disorder prediction 393 407 - -
Amo16g2422 480 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 142 370 IPR031052 GO:0006355
Amo16g2422 480 Pfam FAR1 DNA-binding domain 54 138 IPR004330 -
Amo16g2422 480 PANTHER OS03G0843700 PROTEIN 36 141 - -
Amo16g2422 480 MobiDBLite consensus disorder prediction 385 422 - -
Amo16g2422 480 SMART 26again6 278 305 IPR006564 GO:0008270
Amo16g2422 480 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 141 IPR031052 GO:0006355
Amo16g2422 480 ProSiteProfiles Zinc finger SWIM-type profile. 267 303 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2422 Amo-Chr16 102684771 102687830 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g2422 FAR1 3.5e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2422 - - adu:110280503 569.311