Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2402 ATTCTTCTTCTTCTTCTTCTTCTTCATCTTCTCATTTTTGCGTTCCGCTCTGTTTTGCAGCAACCAAGCCATTCACGCAAGAATATGGACACATCAAATCCTGCAGTTTTTGTCAATGCAGAACTCTTGCAGTTTTATGTTGGAAGGAGGGTTCGGGCTGTGATGCAGGTTGTGCGATCCGAGGGGGGAGTTGTCATTGGAAAATCAACAGATGAGAAGCAGCTAGTTGTGAAAGGGCCCCCACTATGCACCTCTTACAATTTTGTTGAAGTTATTGGCATGTTGACAATGATAGGTCCATTCGAGCCTGAGATATGGACCATTTTGCAATATATGTTCAGCTACAATAAGCTTTGTCAGCTTGCAAATGGAGAATTTAAGCACTTGTTTGTGTGA 396 0.4242 ILLLLLLLHLLIFAFRSVLQQPSHSRKNMDTSNPAVFVNAELLQFYVGRRVRAVMQVVRSEGGVVIGKSTDEKQLVVKGPPLCTSYNFVEVIGMLTMIGPFEPEIWTILQYMFSYNKLCQLANGEFKHLFV* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2402 131 SUPERFAMILY Nucleic acid-binding proteins 34 130 IPR012340 -
Amo16g2402 131 Gene3D - 29 131 IPR012340 -
Amo16g2402 131 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 29 131 - -
Amo16g2402 131 Pfam Replication factor A protein 3 29 96 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo16g2402 131 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A 29 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2402 Amo-Chr16 101858975 101861366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2402 29 131 Core DNA Replication Machinery Family AT4G18590 54.128 6.25e-36 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2402 K10740 - gmx:100306641 130.954