Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2393 ATGGAGAGGTTGGAACTAAAGGAAGTTCAGAGACTTGAAGGCCACACTGATAGGGTTTGGAGCTTGGCTTGGAACCCCGCCACCGGCCACAACGGTGTCCCACTCCTCTTTGCCTCTTGCAGTGGCGACAAAACTATTCGAATCTGGGAACAGAACCTCTCTTCTGGTGTCTGTGTGATGATTGATGCAATGCAGGCGGTTTTGGATGAGCCGCACACTCGAACCGTTCGGTCGTGTGCTTGGTCACCTTCTGGTAAGCTGCTGGCCACTGCAAGTTTTGATGCCTCTACAGCTATATGGGAGAATGTTGGGGGTGATTACGAGTGTGTCTCCACTTTGGAGGGACATGAACACGAAGTGAAGAGTGTGTCTTGGAATGCATCTGGAAACCTACTTGCAACGTGTAGTAGAGATAAATCTGTTTGGATATGGGAAGTGCTGCCAGGGAATGAATTTGAGTGTGTGTCAGTGTTGCAAGGACATACCCAAGATGTGAAAATGGTGAAATGGCATCCAACAATGGATATCTTATTTTCGTGTAGTTATGATAACACTATTAAGGTTTGGGCAGATGAAGGTGATAGTGACGATTGGCAATGCATTCAAACAATAGGAGAACCGAATAATGGTCATACTTCAACTGTTTGGGCACTCTCTTTCAATGTCAGTGGTGATAAAATGGTTACTTGCAGTGATGATCTTACGCTTAAGATATGGGAATCAGAAAATATAGGGATGCAATCTGGTGATGGATTCAGACATTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCTGTTCATTGGTCAAGAGAAGGTATCTTTGCTAGTGGAGCTGCCGATGATGCTATACGTCTTTTTGTGGATGACAATGAAAGTCAAGTGGATGGTCCTCTGTACAAGTTGCTGCTGAAGAAGGAAAAGGCCCATGATATGGACATAAATTCAGTGCAATGGAGCCCTGGGGAGAAGCCGCTATTAGCCTCTGCGAGTGATGATGGGACAATCAAGGTGTGGGAGGTAGTGTCACAGAGGTGA 1053 0.4568 MERLELKEVQRLEGHTDRVWSLAWNPATGHNGVPLLFASCSGDKTIRIWEQNLSSGVCVMIDAMQAVLDEPHTRTVRSCAWSPSGKLLATASFDASTAIWENVGGDYECVSTLEGHEHEVKSVSWNASGNLLATCSRDKSVWIWEVLPGNEFECVSVLQGHTQDVKMVKWHPTMDILFSCSYDNTIKVWADEGDSDDWQCIQTIGEPNNGHTSTVWALSFNVSGDKMVTCSDDLTLKIWESENIGMQSGDGFRHWRHLCTLTGYHDRTIFSVHWSREGIFASGAADDAIRLFVDDNESQVDGPLYKLLLKKEKAHDMDINSVQWSPGEKPLLASASDDGTIKVWEVVSQR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Amo16g2393 350 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 4 347 - -
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 350 IPR001680 GO:0005515
Amo16g2393 350 ProSitePatterns Trp-Asp (WD) repeats signature. 332 346 IPR019775 -
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 240 IPR001680 GO:0005515
Amo16g2393 350 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 4 348 IPR028608 GO:0016226|GO:0097361
Amo16g2393 350 ProSitePatterns Trp-Asp (WD) repeats signature. 132 146 IPR019775 -
Amo16g2393 350 SUPERFAMILY WD40 repeat-like 5 344 IPR036322 GO:0005515
Amo16g2393 350 SMART WD40_4 305 345 IPR001680 GO:0005515
Amo16g2393 350 SMART WD40_4 5 50 IPR001680 GO:0005515
Amo16g2393 350 SMART WD40_4 254 293 IPR001680 GO:0005515
Amo16g2393 350 SMART WD40_4 61 101 IPR001680 GO:0005515
Amo16g2393 350 SMART WD40_4 197 240 IPR001680 GO:0005515
Amo16g2393 350 SMART WD40_4 106 145 IPR001680 GO:0005515
Amo16g2393 350 SMART WD40_4 151 190 IPR001680 GO:0005515
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 350 - -
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 113 146 - -
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 158 189 IPR001680 GO:0005515
Amo16g2393 350 PRINTS G protein beta WD-40 repeat signature 132 146 IPR020472 -
Amo16g2393 350 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Amo16g2393 350 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 69 101 - -
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 158 189 - -
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 240 - -
Amo16g2393 350 PANTHER WD40 PROTEIN CIAO1 4 347 IPR028608 GO:0016226|GO:0097361
Amo16g2393 350 Pfam WD domain, G-beta repeat 313 344 IPR001680 GO:0005515
Amo16g2393 350 Pfam WD domain, G-beta repeat 153 189 IPR001680 GO:0005515
Amo16g2393 350 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Amo16g2393 350 Pfam WD domain, G-beta repeat 198 239 IPR001680 GO:0005515
Amo16g2393 350 Pfam WD domain, G-beta repeat 108 144 IPR001680 GO:0005515
Amo16g2393 350 Pfam WD domain, G-beta repeat 72 100 IPR001680 GO:0005515
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 69 101 IPR001680 GO:0005515
Amo16g2393 350 CDD WD40 8 345 - -
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 50 IPR001680 GO:0005515
Amo16g2393 350 Gene3D - 36 350 IPR015943 GO:0005515
Amo16g2393 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 113 146 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2393 Amo-Chr16 101504206 101508610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2393 84 350 U-box Gene Family AT2G33340 26.592 6.16e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2393 K24730 - aip:107645668 665.611