Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2388 ATGGTGGTACCAGAGGCGGAGATGAACAACAACTCCCAGGGAGAAGTGGAATCGCCGGTAATCCAAGTGGGAGAGCAGCAAGGCGGCAAGAACAACCACCACCCATTCTCCTCCATCGGGAGACAATCATCCATATATTCTCTGACCTTAGATGAGTTCCAACACACACTGTGTGAGAGTGGCAAGAACTTCGGATCCATGAACATGGACGAGTTTCTTAGTAGCATATGGAATGCAGAAGAGAACCAAGCCATAGTAAACTCTTCTAACAACATCACCAATAATAACAATAATAACACACCAGTAGGTGAAGCTTCTTCTGCAATGATGAGGGAACAGCAGCAAAGTCTCCATCGGCAAGGATCACTCACGATTCCGGCGCCTTTAAGCCGGAAAACCGTGGAGGAGGTTTGGTCTGAAATACATAATAAAGGGGAACAGACTCAGCAGCAACAGCAGCAACAGCATCAGCAGAGCAAGAGCAGCAACAGCAATGGCGGCATGCATACAGAGACTACTTATCGCCAGCCAACCTTTGGGGAGATGACTTTGGAGGATTTCTTGGTCAAAGCAGGGGTAGTTCGGGAACAATGTGCAATGCCGGGGATACCACCACCACTAGCAGCTTCTCATCACCATCACCATCCTCATCATCAGCAGCAGCAGTATGGGGTGTATTCTGGTAACAACTCTGCAGCAATGGCTCCTTCTTCTTTTGTTGGAAGGACTATTATCGGTGGTGCTGGTGGTGTGGTTGCGGCTGCTACACCATACCAGGCAGAGCCTTCTGGATACCCTGGGAGTAGTTGCAAGAGGGATGGTGGCGGCGGAGCATACCCTACACCGGGTTCTGCCGGCGGTGTTTGTTATGGAGGGAGGGTGGTGAATGGAGGGGGTGGGTACGGGGTAGGGCCCTTGAGCCCGGGCTCTTCGGACGGGGTGGGAGCTGGGGAGGGTCAGTATGGGGTTGAGATGGGTGTGTTGAGGGGACGCAAGAGGATTGTGGATGGTCCTGTCGAGAAGGTCGTCGAGCGACGGCAGCGGAGGATGATTAAGAACAGAGAATCTGCCGCTAGATCCAGAGCCAGAAAACAGGCGTACACAGTTGAATTAGAAGCAGAACTCAACCAACTGAGAGAAGAGAACGCCCAACTTAAACAGGCGCTGGCTGAGTTCGAAAAGAGAAGAAAGCAACAGTGTTGTGAGGAAATGAACGTTAGAGTTCAAACCAAAGCTCAGAAGGCAACAGAGAAATTGAGAGCATTGAGAAGGAACCAAAGTTGTCCTTTGTGA 1293 0.5089 MVVPEAEMNNNSQGEVESPVIQVGEQQGGKNNHHPFSSIGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLSSIWNAEENQAIVNSSNNITNNNNNNTPVGEASSAMMREQQQSLHRQGSLTIPAPLSRKTVEEVWSEIHNKGEQTQQQQQQQHQQSKSSNSNGGMHTETTYRQPTFGEMTLEDFLVKAGVVREQCAMPGIPPPLAASHHHHHPHHQQQQYGVYSGNNSAAMAPSSFVGRTIIGGAGGVVAAATPYQAEPSGYPGSSCKRDGGGGAYPTPGSAGGVCYGGRVVNGGGGYGVGPLSPGSSDGVGAGEGQYGVEMGVLRGRKRIVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENAQLKQALAEFEKRRKQQCCEEMNVRVQTKAQKATEKLRALRRNQSCPL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2388 430 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 6 429 IPR043452 GO:0003700|GO:0045893
Amo16g2388 430 MobiDBLite consensus disorder prediction 143 178 - -
Amo16g2388 430 MobiDBLite consensus disorder prediction 89 128 - -
Amo16g2388 430 CDD bZIP_plant_BZIP46 345 399 - -
Amo16g2388 430 Coils Coil 361 402 - -
Amo16g2388 430 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 343 395 IPR004827 GO:0003700|GO:0006355
Amo16g2388 430 SMART brlzneu 341 405 IPR004827 GO:0003700|GO:0006355
Amo16g2388 430 Pfam bZIP transcription factor 345 397 IPR004827 GO:0003700|GO:0006355
Amo16g2388 430 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 348 363 IPR004827 GO:0003700|GO:0006355
Amo16g2388 430 Coils Coil 405 425 - -
Amo16g2388 430 MobiDBLite consensus disorder prediction 204 223 - -
Amo16g2388 430 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 6 429 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Amo16g2388 430 MobiDBLite consensus disorder prediction 89 127 - -
Amo16g2388 430 Gene3D - 343 398 - -
Amo16g2388 430 SUPERFAMILY Leucine zipper domain 345 391 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2388 Amo-Chr16 101165856 101171387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2388 1 400 bZIP Transcription Factor Family AT2G36270 52.055 6.25e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo16g2388 bZIP_1 8.8e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2388 K14432 - gmx:100790948 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2388 16 101165856 101171387 Amo16g2388 16 101165856 101171387 ECH
Amo16g2388 16 101165856 101171387 Amo06g1685 06 58115829 58118308 hybridization