Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2375 ATGGCGGAAGAGCACCGATGCCAAGCTCCGGAAGGCCACAAACTCTGTGCCAATAATTGTGGCTTCTTCGGGAGCACAACCACCATGGACCTCTGCTCCAAGTGCTATAGAGATGTTCTCTTGAAGGAGCAAGAACAAGCCAAGACCAAATCCACCATCGAAACCGCTCTCTCCTCCTCCTCAGCCGCAGCTCATCCATCTCCGCCGCCTCCAGCCGTAGATTCCCTCCCTCAACCCTCACCGCTCATCGCCTTGGAATCGTCCGTATGGACGTCTCTAGCGGTTGGATCGGCAGTTCACACGAACCGATGCGCAGCATGCAGGAAACGGATCGGGTTGACCGGTTTTACATGTAGGTGCGGGATCACGTTTTGCGGGGCCCACAGGTACCCGGAGAAGCATGGGTGCGGGTTCGATTTCAAGACGGTAGGAAGGGACGAAATAGCGAGGGCGAATCCCGTGATCAAAGCCCAGAAGCTCGACAAGATTTGA 492 0.5589 MAEEHRCQAPEGHKLCANNCGFFGSTTTMDLCSKCYRDVLLKEQEQAKTKSTIETALSSSSAAAHPSPPPPAVDSLPQPSPLIALESSVWTSLAVGSAVHTNRCAACRKRIGLTGFTCRCGITFCGAHRYPEKHGCGFDFKTVGRDEIARANPVIKAQKLDKI* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2375 163 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 163 - -
Amo16g2375 163 SMART AN1_Zf_4 104 141 IPR000058 GO:0008270
Amo16g2375 163 Gene3D - 90 159 IPR035896 -
Amo16g2375 163 Pfam AN1-like Zinc finger 104 140 IPR000058 GO:0008270
Amo16g2375 163 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Amo16g2375 163 Pfam A20-like zinc finger 15 37 IPR002653 GO:0003677|GO:0008270
Amo16g2375 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 59 - -
Amo16g2375 163 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Amo16g2375 163 ProSiteProfiles Zinc finger AN1-type profile. 98 144 IPR000058 GO:0008270
Amo16g2375 163 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 163 - -
Amo16g2375 163 Gene3D - 1 63 - -
Amo16g2375 163 SUPERFAMILY AN1-like Zinc finger 99 158 IPR035896 -
Amo16g2375 163 MobiDBLite consensus disorder prediction 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2375 Amo-Chr16 99872676 99874931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2375 1 163 C2H2 Transcription Factor Family AT3G52800 51.744 6.43e-50 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2375 - - gmx:100527251 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2375 16 99872676 99874931 Amo16g2375 16 99872676 99874931 ECH