Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2333 ATGGACTTCCATTATCTGAAGCAATGGAGAAACCAGGATGAGTCAGAGGAACAACAACATTCTACAAAGATGCCAAAACTTCTCCCACCAGAATCCCATCAACAACAGCCACCATCACCTGCCTCTGCTCTCCCCTTGTTTGTACCTGAACCCAACAGCAAAGTCACCTGCACCCTGTCAGATTCAACACTTGCTCCTCATACTACTACTACTACTACCACCAAATTCCCCAGAATGGGGAGTTACTTCAGCTTGTCACAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCCGGTGCTGCTGTTCCCCCTGAGCTCCTTCAACCAATCAAGAAAAGCCTCTTCCATTCTTCTCCCTATTTCCTTCACCACTCTCTCCAACACTATCAACCTGCAGCTCTGTTGCAATCAGGGTACTGGGGAAGAGCATCAATGGATCCGGAGCCAGGGCGGTGCCGGAGGACTGACGGGAAGAAGTGGCGGTGCTCGAGGGACGTGGTGGCCGGTCAGAAGTACTGCGAGCGCCACATGCATAGAGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACCACTGGTGGTGGAACTACTTTAGGCGTTGTTTCATCATCTTCTTGTATCTCTTCACCGCCTCTTGCCACTGCCTCATTGAAATCCCCCTTTGATCTCCTTCACCTTAATAATGAACGGTCCTCTGGGAGTGGAGGGACCAAGGAAGAAGAAAACAAGAGGGTGTTTGAAAATCAAGATAACCATCATCATGTGGGTGGGGATGGTGGCAGATCAGGTGGGCACATGCTGAGGCATTTCTTTGATGACTGGCCACGTTCACTGCATCAGGACCCTGAAAACGCTGAAAACAATGGTGGTGGTGGTGGGAGTGGGAGGATGAACTCGGCCACATCACTCTCAATTTCAATGCCTGGAAATAATGCTGCTTCTTCGGATGTATCACTAAAGTTGTCCACTGGGTATGGGGAGGATCCGTGTCCAAGAAATGGGAATGGGAATGCAGAGGCAGAGCAACTGCAGTTGAGTTGGGCCGGAGGCTGGAGTTCGGGGAATCAAGTGGCTTCAATGGGAGGGCCACTTGCTGAGGCACTCAGATCATCCACTTCCACTTCATCTCCCACCAGTGTTCTGCATCACTTGCCTCGTGCTGCTGCCTCTCAGACCAGCTTCATTAGCACCTAG 1218 0.5099 MDFHYLKQWRNQDESEEQQHSTKMPKLLPPESHQQQPPSPASALPLFVPEPNSKVTCTLSDSTLAPHTTTTTTTKFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLFHSSPYFLHHSLQHYQPAALLQSGYWGRASMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTTGGGTTLGVVSSSSCISSPPLATASLKSPFDLLHLNNERSSGSGGTKEEENKRVFENQDNHHHVGGDGGRSGGHMLRHFFDDWPRSLHQDPENAENNGGGGGSGRMNSATSLSISMPGNNAASSDVSLKLSTGYGEDPCPRNGNGNAEAEQLQLSWAGGWSSGNQVASMGGPLAEALRSSTSTSSPTSVLHHLPRAAASQTSFIST* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2333 405 SMART QLQ_2 81 117 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo16g2333 405 MobiDBLite consensus disorder prediction 1 47 - -
Amo16g2333 405 ProSiteProfiles QLQ domain profile. 82 117 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo16g2333 405 Pfam QLQ 83 115 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo16g2333 405 ProSiteProfiles WRC domain profile. 151 195 IPR014977 -
Amo16g2333 405 MobiDBLite consensus disorder prediction 299 323 - -
Amo16g2333 405 MobiDBLite consensus disorder prediction 185 205 - -
Amo16g2333 405 Pfam WRC 152 194 IPR014977 -
Amo16g2333 405 PANTHER - 10 405 IPR031137 GO:0005634|GO:0006351|GO:0032502
Amo16g2333 405 MobiDBLite consensus disorder prediction 1 21 - -
Amo16g2333 405 PANTHER GROWTH-REGULATING FACTOR 3 10 405 - -
Amo16g2333 405 MobiDBLite consensus disorder prediction 376 405 - -
Amo16g2333 405 MobiDBLite consensus disorder prediction 283 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2333 Amo-Chr16 98079074 98081929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2333 1 392 GRF Transcription Factor Family AT2G36400 49.417 2.25e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Amo16g2333 WRC 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2333 - - aip:107648821 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2333 16 98079074 98081929 Amo16g2333 16 98079074 98081929 ECH